B9GF07_POPTR (Populus trichocarpa)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 POPTR_0001s26560 T04011_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0001s26560.1 CCCH ZF 274 295

Links

Other CCCH ZF family RBPs
Other Populus trichocarpa RBPs

8 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AT3G42553 Arabidopsis thaliana AT3G42553-TAIR-G N 0.000
Genemark.10526_g Serpula lacrymans Genemark.10526_g N 0.000
Genemark.10729_g Serpula lacrymans Genemark.10729_g N 0.000
Genemark.3014_g Serpula lacrymans Genemark.3014_g N 0.000
Genemark.4174_g Serpula lacrymans Genemark.4174_g N 0.000
LjSGA_073314.1 Lotus japonicus LjSGA_073314.1 N 0.000
LjSGA_077546.1 Lotus japonicus LjSGA_077546.1 N 0.000
LjSGA_083550.1 Lotus japonicus LjSGA_083550.1 N 0.000
LjSGA_088344.1 Lotus japonicus LjSGA_088344.1 N 0.000
LjSGA_091651.1 Lotus japonicus LjSGA_091651.1 N 0.000
LjSGA_113964.1 Lotus japonicus LjSGA_113964.1 N 0.000
LjSGA_114624.1 Lotus japonicus LjSGA_114624.1 N 0.000
LjSGA_115869.1 Lotus japonicus LjSGA_115869.1 N 0.000
LjSGA_118711.1 Lotus japonicus LjSGA_118711.1 N 0.000
LjSGA_120238.1 Lotus japonicus LjSGA_120238.1 N 0.000
LjSGA_129847.1 Lotus japonicus LjSGA_129847.1 N 0.000
LjSGA_130508.1 Lotus japonicus LjSGA_130508.1 N 0.000
LjSGA_132918.1 Lotus japonicus LjSGA_132918.1 N 0.000
LjSGA_133570.1 Lotus japonicus LjSGA_133570.1 N 0.000
LjSGA_136986.1.1 Lotus japonicus LjSGA_136986.1.1 N 0.000
LOC_Os12g28690 Oryza sativa LOC_Os12g28690 N 0.000
Minc08303 Meloidogyne incognita Minc08303 N 0.000
Minc14969 Meloidogyne incognita Minc14969 N 0.000
Minc15639 Meloidogyne incognita Minc15639 N 0.000
Sb04g021900 Sorghum bicolor Sb04g021900 N 0.000