scaffold_30000002.1 (Arabidopsis lyrata)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 scaffold_30000002.1 T04143_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
scaffold_30000002.1 CCCH ZF 15 40

Links

Other CCCH ZF family RBPs
Other Arabidopsis lyrata RBPs

159 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
185736 Helobdella robusta 185736 N 0.778
29733.m000748 Ricinus communis 29733.m000748 N 0.778
29733.m000763 Ricinus communis 29733.m000763 N 0.778
AAEL001778 Aedes aegypti AAEL001778 N 0.778
AAH97882 Xenopus laevis AAH97882 N 0.741
AAI33788 Xenopus laevis AAI33788 N 0.741
AAR97523 Xenopus laevis AAR97523 N 0.741
AGAP007068 Anopheles gambiae AGAP007068 N 0.778
amel4_ncbi_hmm8953 Apis mellifera amel4_ncbi_hmm8953 N 0.741
Ame_R010811 Ailuropoda melanoleuca Ame_R010811 N 0.741
Aqu1.217710 Amphimedon queenslandica Aqu1.217710 N 0.704
AT1G01350 Arabidopsis thaliana AT1G01350-TAIR-G N 0.815
AT5G06420 Arabidopsis thaliana AT5G06420-TAIR-G N 0.815
BGIBMGA000186 Bombyx mori BGIBMGA000186 N 0.741
BGIOSIBCE006607 Oryza indica BGIOSIBCE006607 N 0.778
Bm1_06930 Brugia malayi Bm1_06930 N 0.741
BRADI3G09570 Brachypodium distachyon BRADI3G09570 N 0.778
CBG18314 Caenorhabditis briggsae CBG18314 N 0.704
CBN12332 Caenorhabditis brenneri CBN12332 N 0.704
chr1.CM0088.900.nc Lotus japonicus chr1.CM0088.900.nc N 0.778
CJA02847 Caenorhabditis japonica CJA02847 N 0.704
CMU_031370 Cryptosporidium muris CMU_031370 N 0.704
CPIJ004936 Culex quinquefasciatus CPIJ004936 N 0.778
CpipJ_CPIJ004936 Culex pipiens CpipJ_CPIJ004936 N 0.778
CRE04837 Caenorhabditis remanei CRE04837 N 0.704
Cucsa.060530 Cucumis sativus Cucsa.060530 N 0.741
DGIL_AUG5s12567g4t1 Acyrtosiphon pisum DGIL_AUG5s12567g4t1 N 0.741
EDO07311.1 Babesia bovis EDO07311.1 N 0.741
ENSACAG00000012485 Anolis carolinensis ENSACAG00000012485 N 0.741
R113A_BOVIN Bos taurus ENSBTAG00000006034 N 0.741
LOC518027 Bos taurus ENSBTAG00000008684 N 0.741
XM_538154.2 Canis familiaris ENSCAFG00000018430 N 0.741
RNF113A Choloepus hoffmanni ENSCHOG00000008711 N 0.704
NP_001027830.1 Ciona intestinalis ENSCING00000009197 N 0.741
RNF113B Callithrix jacchus ENSCJAG00000004501 N 0.741
LOC100388689 Callithrix jacchus ENSCJAG00000022327 N 0.741
ENSCSAVG00000006210 Ciona savignyi ENSCSAVG00000006210 N 0.741
rnf113a Danio rerio ENSDARG00000037930 N 0.741
RNF113A Dasypus novemcinctus ENSDNOG00000015321 N 0.741
LOC100058519 Equus caballus ENSECAG00000003934 N 0.741
ENSECAG00000004638 Equus caballus ENSECAG00000004638 N 0.741
RNF113A Echinops telfairi ENSETEG00000018346 N 0.741
RNF113A Homo sapiens ENSG00000125352 N 0.741
RNF113B Homo sapiens ENSG00000139797 N 0.741
RNF113B Gasterosteus aculeatus ENSGACG00000009738 N 0.741
Q67ER3_CHICK Gallus gallus ENSGALG00000000538 N 0.741
RNF113A Gorilla gorilla ENSGGOG00000002324 N 0.741
RNF113B Gorilla gorilla ENSGGOG00000023052 N 0.741
RNF113A Loxodonta africana ENSLAFG00000013906 N 0.741
ENSMEUG00000001855 Macropus eugenii ENSMEUG00000001855 N 0.741
ENSMGAG00000001753 Meleagris gallopavo ENSMGAG00000001753 N 0.741
RNF113A Microcebus murinus ENSMICG00000001750 N 0.741
ENSMLUG00000010856 Myotis lucifugus ENSMLUG00000010856 N 0.741
ENSMLUG00000016812 Myotis lucifugus ENSMLUG00000016812 N 0.704
RNF113A Macaca mulatta ENSMMUG00000020223 N 0.741
RNF113B Macaca mulatta ENSMMUG00000022250 N 0.741
Rnf113a1 Mus musculus ENSMUSG00000036537 N 0.741
ENSOANG00000002592 Ornithorhynchus anatinus ENSOANG00000002592 N 0.741
RNF113A Oryctolagus cuniculus ENSOCUG00000016207 N 0.741
RNF113A Otolemur garnettii ENSOGAG00000016171 N 0.741
Q67EQ7_ORYLA Oryzias latipes ENSORLG00000002442 N 0.741
RNF113A Procavia capensis ENSPCAG00000014633 N 0.741
ENSPPYG00000005460 Pongo pygmaeus ENSPPYG00000005460 N 0.741
ENSPPYG00000020676 Pongo pygmaeus ENSPPYG00000020676 N 0.741
RNF113B Pan troglodytes ENSPTRG00000005987 N 0.741
RNF113A Pan troglodytes ENSPTRG00000022231 N 0.741
Rnf113a1 Rattus norvegicus ENSRNOG00000034040 N 0.741
ENSSARG00000010436 Sorex araneus ENSSARG00000010436 N 0.741
ENSSSCG00000012610 Sus scrofa ENSSSCG00000012610 N 0.741
ENSSSCG00000012616 Sus scrofa ENSSSCG00000012616 N 0.741
RNF113A Tupaia belangeri ENSTBEG00000012687 N 0.741
RNF113A Taeniopygia guttata ENSTGUG00000001947 N 0.741
RNF113B Tetraodon nigroviridis ENSTNIG00000014938 N 0.741
RNF113B Takifugu rubripes ENSTRUG00000011142 N 0.741
RNF113A Vicugna pacos ENSVPAG00000004521 N 0.741
rnf113a Xenopus tropicalis ENSXETG00000002042 N 0.741
estExt_fgenesh1_pg.C_5430007 Capitella teleta estExt_fgenesh1_pg.C_5430007 N 0.741
estExt_fgenesh1_pm.C_10087 Coccomyxa C 169 estExt_fgenesh1_pm.C_10087 N 0.704
estExt_fgenesh1_pm.C_170027 Phytophthora capsici estExt_fgenesh1_pm.C_170027 N 0.778
estExt_fgenesh2_kg.C_62064 Serpula lacrymans estExt_fgenesh2_kg.C_62064 N 0.704
estExt_fgenesh2_pg.C_50080 Agaricus bisporus estExt_fgenesh2_pg.C_50080 N 0.704
estExt_fgeneshCV_pg.C_10417 Chlorella vulgaris estExt_fgeneshCV_pg.C_10417 N 0.704
estExt_Genewise1.C_120284 Chlorella NC64A estExt_Genewise1.C_120284 N 0.741
estExt_Genewise1.C_sca_120492 Lottia gigantea estExt_Genewise1.C_sca_120492 N 0.741
estExt_Genewise1Plus.C_80076 Volvox carteri estExt_Genewise1Plus.C_80076 N 0.704
estExt_GenewiseH_1.C_3140043 Nematostella vectensis estExt_GenewiseH_1.C_3140043 N 0.741
estExt_GeneWisePlus_human.C_50103 Laccaria bicolor estExt_GeneWisePlus_human.C_50103 N 0.704
estExt_gwp_1W.C_30096 Chlamydomonas reinhardtii estExt_gwp_1W.C_30096 N 0.704
estExt_gwp_gw1.C_1140075 Physcomitrella patens estExt_gwp_gw1.C_1140075 N 0.778
e_gw1.12.147.1 Ostreococcus RCC809 e_gw1.12.147.1 N 0.704
e_gw1.2.1336.1 Trichoplax adhaerens e_gw1.2.1336.1 N 0.778
e_gw1.5.501.1 Pleurotus ostreatus e_gw1.5.501.1 N 0.704
CG4973 Drosophila melanogaster FBgn0038772 N 0.778
GA18564-RA Drosophila pseudoobscura FBgn0064425 N 0.778
GK22373 Drosophila willistoni FBgn0067112 N 0.778
GF17636 Drosophila ananassae FBgn0094654 N 0.778
GG23724 Drosophila erecta FBgn0115865 N 0.778
GH22886 Drosophila grimshawi FBgn0130343 N 0.778
GI22714 Drosophila mojavensis FBgn0145441 N 0.778
GL12088 Drosophila persimilis FBgn0149696 N 0.778
GM17684 Drosophila sechellia FBgn0172592 N 0.778
GD19337 Drosophila simulans FBgn0190839 N 0.778
GJ23438 Drosophila virilis FBgn0210538 N 0.741
GE25648 Drosophila yakuba FBgn0242710 N 0.778
fgenesh1_pg.C_Chr_12.0001000110 Ostreococcus tauri fgenesh1_pg.C_Chr_12.0001000110 N 0.704
fgenesh1_pg.C_scaffold_13000094 Phytophthora ramorum fgenesh1_pg.C_scaffold_13000094 N 0.778
fgenesh2_pg.C_scaffold_6000249 Selaginella moellendorfii fgenesh2_pg.C_scaffold_6000249 N 0.741
FGSG_08901 Fusarium graminearum FGSG_08901 N 0.704
Glyma03g02920.1 Glycine max Glyma03g02920.1 N 0.778
Glyma05g37520.1 Glycine max Glyma05g37520.1 N 0.778
Glyma08g39400.1 Glycine max Glyma08g39400.1 N 0.741
gm1.100391 Emiliania huxleyi gm1.100391 N 0.704
GRMZM2G373653 Zea mays GRMZM2G373653 N 0.778
GSVIVG00027082001 Vitis vinifera GSVIVG00027082001 N 0.704
gw1.1.878.1 Batrachochytrium dendrobatidis gw1.1.878.1 N 0.741
gw1.2.524.1 Monosiga brevicollis gw1.2.524.1 N 0.741
gw1.20.96.1 Phycomyces blakesleeanus gw1.20.96.1 N 0.741
gw1.63.49.1 Postia placenta gw1.63.49.1 N 0.741
gw1.9.174.1 Postia placenta gw1.9.174.1 N 0.741
gw1.9.306.1 Micromonas pusilla gw1.9.306.1 N 0.778
gwEuk.12.222.1 Ostreococcus lucimarinus gwEuk.12.222.1 N 0.704
gww2.6.423.1 Phanerochaete chrysosporium gww2.6.423.1 N 0.704
ISCW023200 Ixodes scapularis ISCW023200 N 0.741
rnf-113 Caenorhabditis elegans K01G5.1 N 0.704
KLTH0E08580g Kluyveromyces thermotolerans KLTH0E08580g N 0.741
Kwal_17638 Kluyveromyces waltii Kwal_17638 N 0.704
LjSGA_011721.2 Lotus japonicus LjSGA_011721.2 N 0.741
LOAG_01140 Loa loa LOAG_01140 N 0.741
LOC_Os02g19804 Oryza sativa LOC_Os02g19804 N 0.778
MDP0000182690 Malus x domestica MDP0000182690 N 0.778
MDP0000202598 Malus x domestica MDP0000202598 N 0.778
MDP0000274000 Malus x domestica MDP0000274000 N 0.778
Medtr7g132570 Medicago truncatula Medtr7g132570 N 0.778
Medtr7g132670 Medicago truncatula Medtr7g132670 N 0.778
Medtr8g068390 Medicago truncatula Medtr8g068390 N 0.741
mgf009866m Mimulus guttatus mgf009866m N 0.778
Minc18333 Meloidogyne incognita Minc18333 N 0.741
nasonia_NCBI_hmm132664 Nasonia vitripennis nasonia_NCBI_hmm132664 N 0.741
PASA_GEN_19100012 Daphnia pulex PASA_GEN_19100012 N 0.704
PHUM169980 Pediculus humanus PHUM169980 N 0.741
PITG_04905 Phytophthora infestans PITG_04905 N 0.741
PK05761.1 Cannabis sativa PK05761.1 N 0.778
ppa009728m Prunus persica ppa009728m N 0.778
Ppa-tag-331 Pristionchus pacificus PPA25510 N 0.704
PTSG_02658 Salpingoeca rosetta PTSG_02658 N 0.741
SAKL0H22880g Lachancea kluyveri SAKL0H22880g N 0.704
SB04G009270 Sorghum bicolor Sb04g009270 N 0.778
XM_002892025.1 Arabidopsis lyrata scaffold_100114.1 N 0.815
SJAG_03112 Schizosaccharomyces japonicus SJAG_03112 N 0.741
Skud_Contig756.2 Saccharomyces kudriavzevii Skud_Contig756.2 N 0.704
Smp_033590 Schistosoma mansoni Smp_033590 N 0.741
SPPG_00604 Spizellomyces punctatus SPPG_00604 N 0.741
s_444298 Phytophthora sojae s_444298 N 0.741
TA05795 Theileria annulata TA05795 N 0.741
TP01_0812 Theileria parva TP01_0812 N 0.741
UM05163 Ustilago maydis UM05163 N 0.704
WUBG_06682 Wuchereria bancrofti WUBG_06682 N 0.741
XP_002169878.1 Hydra magnipapillata XP_002169878.1 N 0.741
CWC24 Saccharomyces cerevisiae YLR323C N 0.704