Glyma08g39400.1 (Glycine max)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 Glyma08g39400.1 T05419_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Glyma08g39400.1 CCCH ZF 159 185

Links

Other CCCH ZF family RBPs
Other Glycine max RBPs

187 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
LOC_Os02g19804 Oryza sativa LOC_Os02g19804 N 0.889
SPPG_00604 Spizellomyces punctatus SPPG_00604 N 0.889
SB04G009270 Sorghum bicolor Sb04g009270 N 0.889
29733.m000748 Ricinus communis 29733.m000748 N 0.889
29733.m000763 Ricinus communis 29733.m000763 N 0.889
BRADI3G09570 Brachypodium distachyon BRADI3G09570 N 0.889
BGIOSIBCE006607 Oryza indica BGIOSIBCE006607 N 0.889
PK05761.1 Cannabis sativa PK05761.1 N 0.889
ppa009728m Prunus persica ppa009728m N 0.889
MDP0000274000 Malus x domestica MDP0000274000 N 0.889
MDP0000202598 Malus x domestica MDP0000202598 N 0.889
MDP0000182690 Malus x domestica MDP0000182690 N 0.889
Medtr7g132670 Medicago truncatula Medtr7g132670 N 0.889
chr1.CM0088.900.nc Lotus japonicus chr1.CM0088.900.nc N 0.889
Glyma05g37520.1 Glycine max Glyma05g37520.1 N 0.889
Glyma03g02920.1 Glycine max Glyma03g02920.1 N 0.889
estExt_gwp_gw1.C_1140075 Physcomitrella patens estExt_gwp_gw1.C_1140075 N 0.889
GRMZM2G373653 Zea mays GRMZM2G373653 N 0.889
Medtr7g132570 Medicago truncatula Medtr7g132570 N 0.889
mgf009866m Mimulus guttatus mgf009866m N 0.889
Cucsa.060530 Cucumis sativus Cucsa.060530 N 0.852
estExt_Genewise1.C_120284 Chlorella NC64A estExt_Genewise1.C_120284 N 0.852
AT5G06420 Arabidopsis thaliana AT5G06420-TAIR-G N 0.852
estExt_fgenesh1_pm.C_170027 Phytophthora capsici estExt_fgenesh1_pm.C_170027 N 0.852
LjSGA_011721.2 Lotus japonicus LjSGA_011721.2 N 0.852
gw1.1.878.1 Batrachochytrium dendrobatidis gw1.1.878.1 N 0.852
XM_002892025.1 Arabidopsis lyrata scaffold_100114.1 N 0.852
ISCW023200 Ixodes scapularis ISCW023200 N 0.852
fgenesh1_pg.C_scaffold_13000094 Phytophthora ramorum fgenesh1_pg.C_scaffold_13000094 N 0.852
AT1G01350 Arabidopsis thaliana AT1G01350-TAIR-G N 0.852
ENSMEUG00000001855 Macropus eugenii ENSMEUG00000001855 N 0.815
ENSMGAG00000001753 Meleagris gallopavo ENSMGAG00000001753 N 0.815
Q67EQ7_ORYLA Oryzias latipes ENSORLG00000002442 N 0.815
RNF113A Macaca mulatta ENSMMUG00000020223 N 0.815
RNF113A Loxodonta africana ENSLAFG00000013906 N 0.815
Rnf113a1 Mus musculus ENSMUSG00000036537 N 0.815
ENSOANG00000002592 Ornithorhynchus anatinus ENSOANG00000002592 N 0.815
RNF113A Oryctolagus cuniculus ENSOCUG00000016207 N 0.815
RNF113B Macaca mulatta ENSMMUG00000022250 N 0.815
RNF113A Microcebus murinus ENSMICG00000001750 N 0.815
ENSMLUG00000010856 Myotis lucifugus ENSMLUG00000010856 N 0.815
RNF113A Otolemur garnettii ENSOGAG00000016171 N 0.815
RNF113A Homo sapiens ENSG00000125352 N 0.815
RNF113A Dasypus novemcinctus ENSDNOG00000015321 N 0.815
LOC100058519 Equus caballus ENSECAG00000003934 N 0.815
rnf113a Danio rerio ENSDARG00000037930 N 0.815
LOC100388689 Callithrix jacchus ENSCJAG00000022327 N 0.815
RNF113B Callithrix jacchus ENSCJAG00000004501 N 0.815
ENSECAG00000004638 Equus caballus ENSECAG00000004638 N 0.815
RNF113A Echinops telfairi ENSETEG00000018346 N 0.815
Q67ER3_CHICK Gallus gallus ENSGALG00000000538 N 0.815
RNF113A Gorilla gorilla ENSGGOG00000002324 N 0.815
RNF113B Gasterosteus aculeatus ENSGACG00000009738 N 0.815
RNF113B Homo sapiens ENSG00000139797 N 0.815
RNF113A Procavia capensis ENSPCAG00000014633 N 0.815
RNF113B Gorilla gorilla ENSGGOG00000023052 N 0.815
RNF113A Vicugna pacos ENSVPAG00000004521 N 0.815
GM17684 Drosophila sechellia FBgn0172592 N 0.815
GD19337 Drosophila simulans FBgn0190839 N 0.815
GE25648 Drosophila yakuba FBgn0242710 N 0.815
GL12088 Drosophila persimilis FBgn0149696 N 0.815
GI22714 Drosophila mojavensis FBgn0145441 N 0.815
GG23724 Drosophila erecta FBgn0115865 N 0.815
GH22886 Drosophila grimshawi FBgn0130343 N 0.815
GSVIVG00027082001 Vitis vinifera GSVIVG00027082001 N 0.815
PHUM169980 Pediculus humanus PHUM169980 N 0.815
estExt_Genewise1.C_sca_120492 Lottia gigantea estExt_Genewise1.C_sca_120492 N 0.815
estExt_GenewiseH_1.C_3140043 Nematostella vectensis estExt_GenewiseH_1.C_3140043 N 0.815
estExt_fgenesh1_pg.C_5430007 Capitella teleta estExt_fgenesh1_pg.C_5430007 N 0.815
e_gw1.2.1336.1 Trichoplax adhaerens e_gw1.2.1336.1 N 0.815
185736 Helobdella robusta 185736 N 0.815
4131 Aureococcus anophagefferens 4131 N 0.815
GF17636 Drosophila ananassae FBgn0094654 N 0.815
GK22373 Drosophila willistoni FBgn0067112 N 0.815
ENSSARG00000010436 Sorex araneus ENSSARG00000010436 N 0.815
ENSSSCG00000012610 Sus scrofa ENSSSCG00000012610 N 0.815
ENSSSCG00000012616 Sus scrofa ENSSSCG00000012616 N 0.815
Rnf113a1 Rattus norvegicus ENSRNOG00000034040 N 0.815
RNF113A Pan troglodytes ENSPTRG00000022231 N 0.815
ENSPPYG00000020676 Pongo pygmaeus ENSPPYG00000020676 N 0.815
RNF113B Pan troglodytes ENSPTRG00000005987 N 0.815
RNF113A Tupaia belangeri ENSTBEG00000012687 N 0.815
RNF113A Taeniopygia guttata ENSTGUG00000001947 N 0.815
CG4973 Drosophila melanogaster FBgn0038772 N 0.815
GA18564-RA Drosophila pseudoobscura FBgn0064425 N 0.815
rnf113a Xenopus tropicalis ENSXETG00000002042 N 0.815
NP_001027830.1 Ciona intestinalis ENSCING00000009197 N 0.815
RNF113B Tetraodon nigroviridis ENSTNIG00000014938 N 0.815
RNF113B Takifugu rubripes ENSTRUG00000011142 N 0.815
ENSPPYG00000005460 Pongo pygmaeus ENSPPYG00000005460 N 0.815
ENSCSAVG00000006210 Ciona savignyi ENSCSAVG00000006210 N 0.815
s_444298 Phytophthora sojae s_444298 N 0.815
gw1.9.306.1 Micromonas pusilla gw1.9.306.1 N 0.815
estExt_fgenesh1_pm.C_10087 Coccomyxa C 169 estExt_fgenesh1_pm.C_10087 N 0.815
CpipJ_CPIJ004936 Culex pipiens CpipJ_CPIJ004936 N 0.815
amel4_ncbi_hmm8953 Apis mellifera amel4_ncbi_hmm8953 N 0.815
AAR97523 Xenopus laevis AAR97523 N 0.815
AAI33788 Xenopus laevis AAI33788 N 0.815
estExt_fgeneshCV_pg.C_10417 Chlorella vulgaris estExt_fgeneshCV_pg.C_10417 N 0.815
Ame_R010811 Ailuropoda melanoleuca Ame_R010811 N 0.815
estExt_Genewise1Plus.C_21344 Tremella mesenterica estExt_Genewise1Plus.C_21344 N 0.815
XP_002169878.1 Hydra magnipapillata XP_002169878.1 N 0.815
AAH97882 Xenopus laevis AAH97882 N 0.815
DGIL_AUG5s12567g4t1 Acyrtosiphon pisum DGIL_AUG5s12567g4t1 N 0.815
PITG_04905 Phytophthora infestans PITG_04905 N 0.815
nasonia_NCBI_hmm132664 Nasonia vitripennis nasonia_NCBI_hmm132664 N 0.815
ENSACAG00000012485 Anolis carolinensis ENSACAG00000012485 N 0.815
gw1.20.96.1 Phycomyces blakesleeanus gw1.20.96.1 N 0.815
R113A_BOVIN Bos taurus ENSBTAG00000006034 N 0.815
AGAP007068 Anopheles gambiae AGAP007068 N 0.815
CPIJ004936 Culex quinquefasciatus CPIJ004936 N 0.815
AAEL001778 Aedes aegypti AAEL001778 N 0.815
XM_538154.2 Canis familiaris ENSCAFG00000018430 N 0.815
LOC518027 Bos taurus ENSBTAG00000008684 N 0.815
BGIBMGA000186 Bombyx mori BGIBMGA000186 N 0.815
XP_001196290.1 Strongylocentrotus purpuratus XP_001196290.1 N 0.778
XP_783481.2 Strongylocentrotus purpuratus XP_783481.2 N 0.778
PASA_GEN_19100012 Daphnia pulex PASA_GEN_19100012 N 0.778
RNF113A Choloepus hoffmanni ENSCHOG00000008711 N 0.778
estExt_Genewise1Plus.C_80076 Volvox carteri estExt_Genewise1Plus.C_80076 N 0.778
KLTH0E08580g Kluyveromyces thermotolerans KLTH0E08580g N 0.778
Minc18333 Meloidogyne incognita Minc18333 N 0.778
TA05795 Theileria annulata TA05795 N 0.778
Smp_033590 Schistosoma mansoni Smp_033590 N 0.778
TP01_0812 Theileria parva TP01_0812 N 0.778
gw1.2.524.1 Monosiga brevicollis gw1.2.524.1 N 0.778
SPRG_10807 Saprolegnia parasitica SPRG_10807 N 0.778
fgenesh2_pg.C_scaffold_6000249 Selaginella moellendorfii fgenesh2_pg.C_scaffold_6000249 N 0.778
gw1.63.49.1 Postia placenta gw1.63.49.1 N 0.778
ENSMLUG00000016812 Myotis lucifugus ENSMLUG00000016812 N 0.778
SPRG_14175 Saprolegnia parasitica SPRG_14175 N 0.778
fgenesh2_pg.scaffold_2135000001 Branchiostoma floridae fgenesh2_pg.scaffold_2135000001 N 0.778
Aqu1.217710 Amphimedon queenslandica Aqu1.217710 N 0.778
EDO07311.1 Babesia bovis EDO07311.1 N 0.778
SJAG_03112 Schizosaccharomyces japonicus SJAG_03112 N 0.778
Medtr8g068390 Medicago truncatula Medtr8g068390 N 0.778
estExt_gwp_1W.C_30096 Chlamydomonas reinhardtii estExt_gwp_1W.C_30096 N 0.778
fgenesh2_pm.scaffold_144000004 Branchiostoma floridae fgenesh2_pm.scaffold_144000004 N 0.778
gw1.9.174.1 Postia placenta gw1.9.174.1 N 0.778
PTSG_02658 Salpingoeca rosetta PTSG_02658 N 0.778
GJ23438 Drosophila virilis FBgn0210538 N 0.778
Ppa-tag-331 Pristionchus pacificus PPA25510 N 0.741
gww2.6.423.1 Phanerochaete chrysosporium gww2.6.423.1 N 0.741
CMU_031370 Cryptosporidium muris CMU_031370 N 0.741
A7TKV6_VANPO Vanderwaltozyma polyspora A7TKV6_VANPO N 0.741
e_gw1.5.501.1 Pleurotus ostreatus e_gw1.5.501.1 N 0.741
e_gw1.8.388.1 Schizophyllum commune e_gw1.8.388.1 N 0.741
scaffold_30000002.1 Arabidopsis lyrata scaffold_30000002.1 N 0.741
YALI0C22484g Yarrowia lipolytica YALI0C22484g N 0.741
fgeneshNG_pg.scaffold_2000259 Naegleria gruberi fgeneshNG_pg.scaffold_2000259 N 0.741
estExt_GeneWisePlus_human.C_50103 Laccaria bicolor estExt_GeneWisePlus_human.C_50103 N 0.741
UM05163 Ustilago maydis UM05163 N 0.741
CAOG_06860 Capsaspora owczarzaki CAOG_06860 N 0.741
SAKL0H22880g Lachancea kluyveri SAKL0H22880g N 0.741
Kwal_17638 Kluyveromyces waltii Kwal_17638 N 0.741
XM_537309.2 Canis familiaris ENSCAFG00000018373 N 0.741
estExt_fgenesh2_kg.C_62064 Serpula lacrymans estExt_fgenesh2_kg.C_62064 N 0.741
estExt_fgenesh2_pg.C_30366 Heterobasidion annosum estExt_fgenesh2_pg.C_30366 N 0.741
estExt_fgenesh2_pg.C_50080 Agaricus bisporus estExt_fgenesh2_pg.C_50080 N 0.741
CC1G_03236 Coprinopsis cinerea CC1G_03236 N 0.741
PredSwiss_CON4272.1 Pneumocystis carinii PredSwiss_CON4272.1 N 0.704
gwEuk.12.222.1 Ostreococcus lucimarinus gwEuk.12.222.1 N 0.704
estExt_Genewise1.C_340021 Melampsora laricis populina estExt_Genewise1.C_340021 N 0.704
e_gw1.12.147.1 Ostreococcus RCC809 e_gw1.12.147.1 N 0.704
KLLA0C18260g Kluyveromyces lactis KLLA0C18260g N 0.704
SOCG_00229 Schizosaccharomyces octosporus SOCG_00229 N 0.704
LOAG_01140 Loa loa LOAG_01140 N 0.704
Bm1_06930 Brugia malayi Bm1_06930 N 0.704
AMAG_15438 Allomyces macrogynus AMAG_15438 N 0.704
SPOG_02814 Schizosaccharomyces cryophilus SPOG_02814 N 0.704
WUBG_06682 Wuchereria bancrofti WUBG_06682 N 0.704
CRE04837 Caenorhabditis remanei CRE04837 N 0.704
CJA02847 Caenorhabditis japonica CJA02847 N 0.704
CBN12332 Caenorhabditis brenneri CBN12332 N 0.704
CBG18314 Caenorhabditis briggsae CBG18314 N 0.704
AMAG_06522 Allomyces macrogynus AMAG_06522 N 0.704
fgenesh1_pg.C_Chr_12.0001000110 Ostreococcus tauri fgenesh1_pg.C_Chr_12.0001000110 N 0.704
CWC24 Saccharomyces cerevisiae YLR323C N 0.704
cgd6_3300 Cryptosporidium parvum cgd6_3300 N 0.704
Chro.60383 Cryptosporidium hominis Chro.60383 N 0.704
EIN_221510 Entamoeba invadens EIN_221510 N 0.704
THAPSDRAFT_25179 Thalassiosira pseudonana Thaps25179 N 0.704
cwf24 Schizosaccharomyces pombe SPBC13E7.02 N 0.704
rnf-113 Caenorhabditis elegans K01G5.1 N 0.704
PHATRDRAFT_12516 Phaeodactylum tricornutum Phatr12516 N 0.704
CWC24 Ashbya gossypii CWC24 N 0.704
Skud_Contig756.2 Saccharomyces kudriavzevii Skud_Contig756.2 N 0.704