AT1G01350 (Arabidopsis thaliana)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 AT1G01350-TAIR-G T01874_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
AT1G01350.1-P CCCH ZF 201 227

Links

Other CCCH ZF family RBPs
Other Arabidopsis thaliana RBPs

261 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
XM_002892025.1 Arabidopsis lyrata scaffold_100114.1 N 1.000
AT5G06420 Arabidopsis thaliana AT5G06420-TAIR-G N 1.000
SB04G009270 Sorghum bicolor Sb04g009270 N 0.963
LOC_Os02g19804 Oryza sativa LOC_Os02g19804 N 0.963
GE25648 Drosophila yakuba FBgn0242710 N 0.963
AGAP007068 Anopheles gambiae AGAP007068 N 0.963
185736 Helobdella robusta 185736 N 0.963
29733.m000763 Ricinus communis 29733.m000763 N 0.963
29733.m000748 Ricinus communis 29733.m000748 N 0.963
GD19337 Drosophila simulans FBgn0190839 N 0.963
GM17684 Drosophila sechellia FBgn0172592 N 0.963
GF17636 Drosophila ananassae FBgn0094654 N 0.963
GK22373 Drosophila willistoni FBgn0067112 N 0.963
GA18564-RA Drosophila pseudoobscura FBgn0064425 N 0.963
GG23724 Drosophila erecta FBgn0115865 N 0.963
GH22886 Drosophila grimshawi FBgn0130343 N 0.963
GL12088 Drosophila persimilis FBgn0149696 N 0.963
GI22714 Drosophila mojavensis FBgn0145441 N 0.963
e_gw1.2.1336.1 Trichoplax adhaerens e_gw1.2.1336.1 N 0.963
estExt_gwp_gw1.C_1140075 Physcomitrella patens estExt_gwp_gw1.C_1140075 N 0.963
MDP0000202598 Malus x domestica MDP0000202598 N 0.963
MDP0000182690 Malus x domestica MDP0000182690 N 0.963
estExt_fgenesh1_pm.C_170027 Phytophthora capsici estExt_fgenesh1_pm.C_170027 N 0.963
MDP0000274000 Malus x domestica MDP0000274000 N 0.963
ppa009728m Prunus persica ppa009728m N 0.963
PK05761.1 Cannabis sativa PK05761.1 N 0.963
CpipJ_CPIJ004936 Culex pipiens CpipJ_CPIJ004936 N 0.963
chr1.CM0088.900.nc Lotus japonicus chr1.CM0088.900.nc N 0.963
Medtr7g132670 Medicago truncatula Medtr7g132670 N 0.963
Glyma03g02920.1 Glycine max Glyma03g02920.1 N 0.963
CG4973 Drosophila melanogaster FBgn0038772 N 0.963
Glyma05g37520.1 Glycine max Glyma05g37520.1 N 0.963
mgf009866m Mimulus guttatus mgf009866m N 0.963
Medtr7g132570 Medicago truncatula Medtr7g132570 N 0.963
GRMZM2G373653 Zea mays GRMZM2G373653 N 0.963
AAEL001778 Aedes aegypti AAEL001778 N 0.963
fgenesh1_pg.C_scaffold_13000094 Phytophthora ramorum fgenesh1_pg.C_scaffold_13000094 N 0.963
BRADI3G09570 Brachypodium distachyon BRADI3G09570 N 0.963
BGIOSIBCE006607 Oryza indica BGIOSIBCE006607 N 0.963
CPIJ004936 Culex quinquefasciatus CPIJ004936 N 0.963
TP01_0812 Theileria parva TP01_0812 N 0.926
LjSGA_011721.2 Lotus japonicus LjSGA_011721.2 N 0.926
TA05795 Theileria annulata TA05795 N 0.926
KLTH0E08580g Kluyveromyces thermotolerans KLTH0E08580g N 0.926
ENSCSAVG00000006210 Ciona savignyi ENSCSAVG00000006210 N 0.926
EDO07311.1 Babesia bovis EDO07311.1 N 0.926
RNF113B Callithrix jacchus ENSCJAG00000004501 N 0.926
LOC100388689 Callithrix jacchus ENSCJAG00000022327 N 0.926
XP_002169878.1 Hydra magnipapillata XP_002169878.1 N 0.926
AAI33788 Xenopus laevis AAI33788 N 0.926
SPPG_00604 Spizellomyces punctatus SPPG_00604 N 0.926
fgenesh2_pg.C_scaffold_6000249 Selaginella moellendorfii fgenesh2_pg.C_scaffold_6000249 N 0.926
RNF113A Dasypus novemcinctus ENSDNOG00000015321 N 0.926
SJAG_03112 Schizosaccharomyces japonicus SJAG_03112 N 0.926
PTSG_02658 Salpingoeca rosetta PTSG_02658 N 0.926
AAR97523 Xenopus laevis AAR97523 N 0.926
PITG_04905 Phytophthora infestans PITG_04905 N 0.926
AAH97882 Xenopus laevis AAH97882 N 0.926
Cucsa.060530 Cucumis sativus Cucsa.060530 N 0.926
gw1.2.524.1 Monosiga brevicollis gw1.2.524.1 N 0.926
estExt_Genewise1.C_sca_120492 Lottia gigantea estExt_Genewise1.C_sca_120492 N 0.926
gw1.63.49.1 Postia placenta gw1.63.49.1 N 0.926
estExt_Genewise1.C_120284 Chlorella NC64A estExt_Genewise1.C_120284 N 0.926
estExt_GenewiseH_1.C_3140043 Nematostella vectensis estExt_GenewiseH_1.C_3140043 N 0.926
gw1.20.96.1 Phycomyces blakesleeanus gw1.20.96.1 N 0.926
XM_538154.2 Canis familiaris ENSCAFG00000018430 N 0.926
LOC518027 Bos taurus ENSBTAG00000008684 N 0.926
gw1.1.878.1 Batrachochytrium dendrobatidis gw1.1.878.1 N 0.926
gw1.9.174.1 Postia placenta gw1.9.174.1 N 0.926
RNF113A Microcebus murinus ENSMICG00000001750 N 0.926
Medtr8g068390 Medicago truncatula Medtr8g068390 N 0.926
BGIBMGA000186 Bombyx mori BGIBMGA000186 N 0.926
PHUM169980 Pediculus humanus PHUM169980 N 0.926
NP_001027830.1 Ciona intestinalis ENSCING00000009197 N 0.926
ENSACAG00000012485 Anolis carolinensis ENSACAG00000012485 N 0.926
R113A_BOVIN Bos taurus ENSBTAG00000006034 N 0.926
estExt_fgenesh1_pg.C_5430007 Capitella teleta estExt_fgenesh1_pg.C_5430007 N 0.926
s_444298 Phytophthora sojae s_444298 N 0.926
Ame_R010811 Ailuropoda melanoleuca Ame_R010811 N 0.926
rnf113a Danio rerio ENSDARG00000037930 N 0.926
ENSSSCG00000012610 Sus scrofa ENSSSCG00000012610 N 0.926
ENSSSCG00000012616 Sus scrofa ENSSSCG00000012616 N 0.926
ENSSARG00000010436 Sorex araneus ENSSARG00000010436 N 0.926
Rnf113a1 Rattus norvegicus ENSRNOG00000034040 N 0.926
RNF113A Pan troglodytes ENSPTRG00000022231 N 0.926
RNF113A Tupaia belangeri ENSTBEG00000012687 N 0.926
RNF113A Taeniopygia guttata ENSTGUG00000001947 N 0.926
rnf113a Xenopus tropicalis ENSXETG00000002042 N 0.926
RNF113A Vicugna pacos ENSVPAG00000004521 N 0.926
RNF113B Takifugu rubripes ENSTRUG00000011142 N 0.926
RNF113B Tetraodon nigroviridis ENSTNIG00000014938 N 0.926
RNF113B Pan troglodytes ENSPTRG00000005987 N 0.926
ENSPPYG00000020676 Pongo pygmaeus ENSPPYG00000020676 N 0.926
Rnf113a1 Mus musculus ENSMUSG00000036537 N 0.926
RNF113B Macaca mulatta ENSMMUG00000022250 N 0.926
RNF113A Macaca mulatta ENSMMUG00000020223 N 0.926
ENSMLUG00000010856 Myotis lucifugus ENSMLUG00000010856 N 0.926
ENSOANG00000002592 Ornithorhynchus anatinus ENSOANG00000002592 N 0.926
RNF113A Oryctolagus cuniculus ENSOCUG00000016207 N 0.926
ENSPPYG00000005460 Pongo pygmaeus ENSPPYG00000005460 N 0.926
RNF113A Procavia capensis ENSPCAG00000014633 N 0.926
Q67EQ7_ORYLA Oryzias latipes ENSORLG00000002442 N 0.926
RNF113A Otolemur garnettii ENSOGAG00000016171 N 0.926
amel4_ncbi_hmm8953 Apis mellifera amel4_ncbi_hmm8953 N 0.926
ENSMGAG00000001753 Meleagris gallopavo ENSMGAG00000001753 N 0.926
RNF113A Homo sapiens ENSG00000125352 N 0.926
RNF113A Echinops telfairi ENSETEG00000018346 N 0.926
RNF113B Homo sapiens ENSG00000139797 N 0.926
RNF113B Gasterosteus aculeatus ENSGACG00000009738 N 0.926
Q67ER3_CHICK Gallus gallus ENSGALG00000000538 N 0.926
GJ23438 Drosophila virilis FBgn0210538 N 0.926
ENSECAG00000004638 Equus caballus ENSECAG00000004638 N 0.926
DGIL_AUG5s12567g4t1 Acyrtosiphon pisum DGIL_AUG5s12567g4t1 N 0.926
LOC100058519 Equus caballus ENSECAG00000003934 N 0.926
nasonia_NCBI_hmm132664 Nasonia vitripennis nasonia_NCBI_hmm132664 N 0.926
ISCW023200 Ixodes scapularis ISCW023200 N 0.926
ENSMEUG00000001855 Macropus eugenii ENSMEUG00000001855 N 0.926
RNF113A Gorilla gorilla ENSGGOG00000002324 N 0.926
RNF113B Gorilla gorilla ENSGGOG00000023052 N 0.926
RNF113A Loxodonta africana ENSLAFG00000013906 N 0.926
estExt_fgenesh2_kg.C_62064 Serpula lacrymans estExt_fgenesh2_kg.C_62064 N 0.889
estExt_fgenesh1_pm.C_10087 Coccomyxa C 169 estExt_fgenesh1_pm.C_10087 N 0.889
e_gw1.5.501.1 Pleurotus ostreatus e_gw1.5.501.1 N 0.889
UM05163 Ustilago maydis UM05163 N 0.889
estExt_fgenesh2_pg.C_50080 Agaricus bisporus estExt_fgenesh2_pg.C_50080 N 0.889
estExt_fgeneshCV_pg.C_10417 Chlorella vulgaris estExt_fgeneshCV_pg.C_10417 N 0.889
SAKL0H22880g Lachancea kluyveri SAKL0H22880g N 0.889
gww2.6.423.1 Phanerochaete chrysosporium gww2.6.423.1 N 0.889
Kwal_17638 Kluyveromyces waltii Kwal_17638 N 0.889
PASA_GEN_19100012 Daphnia pulex PASA_GEN_19100012 N 0.889
Smp_033590 Schistosoma mansoni Smp_033590 N 0.889
gw1.9.306.1 Micromonas pusilla gw1.9.306.1 N 0.889
GSVIVG00027082001 Vitis vinifera GSVIVG00027082001 N 0.889
RNF113A Choloepus hoffmanni ENSCHOG00000008711 N 0.889
estExt_GeneWisePlus_human.C_50103 Laccaria bicolor estExt_GeneWisePlus_human.C_50103 N 0.889
ENSMLUG00000016812 Myotis lucifugus ENSMLUG00000016812 N 0.889
CMU_031370 Cryptosporidium muris CMU_031370 N 0.889
Aqu1.217710 Amphimedon queenslandica Aqu1.217710 N 0.889
e_gw1.8.388.1 Schizophyllum commune e_gw1.8.388.1 N 0.852
Chro.60383 Cryptosporidium hominis Chro.60383 N 0.852
cgd6_3300 Cryptosporidium parvum cgd6_3300 N 0.852
estExt_fgenesh2_pg.C_30366 Heterobasidion annosum estExt_fgenesh2_pg.C_30366 N 0.852
CWC24 Saccharomyces cerevisiae YLR323C N 0.852
estExt_Genewise1Plus.C_21344 Tremella mesenterica estExt_Genewise1Plus.C_21344 N 0.852
cwf24 Schizosaccharomyces pombe SPBC13E7.02 N 0.852
Minc18333 Meloidogyne incognita Minc18333 N 0.852
KLLA0C18260g Kluyveromyces lactis KLLA0C18260g N 0.852
A7TKV6_VANPO Vanderwaltozyma polyspora A7TKV6_VANPO N 0.852
Glyma08g39400.1 Glycine max Glyma08g39400.1 N 0.852
XM_537309.2 Canis familiaris ENSCAFG00000018373 N 0.852
CC1G_03236 Coprinopsis cinerea CC1G_03236 N 0.852
4131 Aureococcus anophagefferens 4131 N 0.852
YALI0C22484g Yarrowia lipolytica YALI0C22484g N 0.852
estExt_gwp_1W.C_30096 Chlamydomonas reinhardtii estExt_gwp_1W.C_30096 N 0.852
estExt_Genewise1Plus.C_80076 Volvox carteri estExt_Genewise1Plus.C_80076 N 0.852
Skud_Contig756.2 Saccharomyces kudriavzevii Skud_Contig756.2 N 0.852
TGME49_026560 Toxoplasma gondii TGME49_026560 N 0.815
Bm1_06930 Brugia malayi Bm1_06930 N 0.815
TGGT1_081710 Toxoplasma gondii TGGT1_081710 N 0.815
TGVEG_067620 Toxoplasma gondii TGVEG_067620 N 0.815
AMAG_06522 Allomyces macrogynus AMAG_06522 N 0.815
XP_002490540.1 Pichia pastoris XP_002490540.1 N 0.815
XP_001196290.1 Strongylocentrotus purpuratus XP_001196290.1 N 0.815
NCLIV_046420 Neospora caninum NCLIV_046420 N 0.815
EIN_221510 Entamoeba invadens EIN_221510 N 0.815
XP_783481.2 Strongylocentrotus purpuratus XP_783481.2 N 0.815
CWC24 Ashbya gossypii CWC24 N 0.815
fgenesh1_pg.C_Chr_12.0001000110 Ostreococcus tauri fgenesh1_pg.C_Chr_12.0001000110 N 0.815
AMAG_15438 Allomyces macrogynus AMAG_15438 N 0.815
PKH_126250 Plasmodium knowlesi PKH_126250 N 0.815
PVX_118300 Plasmodium vivax PVX_118300 N 0.815
LOAG_01140 Loa loa LOAG_01140 N 0.815
WUBG_06682 Wuchereria bancrofti WUBG_06682 N 0.815
gwEuk.12.222.1 Ostreococcus lucimarinus gwEuk.12.222.1 N 0.815
SPRG_14175 Saprolegnia parasitica SPRG_14175 N 0.815
SPRG_10807 Saprolegnia parasitica SPRG_10807 N 0.815
PHATRDRAFT_12516 Phaeodactylum tricornutum Phatr12516 N 0.815
estExt_Genewise1.C_340021 Melampsora laricis populina estExt_Genewise1.C_340021 N 0.815
fgenesh2_pg.scaffold_2135000001 Branchiostoma floridae fgenesh2_pg.scaffold_2135000001 N 0.815
fgenesh2_pm.scaffold_144000004 Branchiostoma floridae fgenesh2_pm.scaffold_144000004 N 0.815
fgeneshNG_pg.scaffold_2000259 Naegleria gruberi fgeneshNG_pg.scaffold_2000259 N 0.815
gm1.100391 Emiliania huxleyi gm1.100391 N 0.815
SPOG_02814 Schizosaccharomyces cryophilus SPOG_02814 N 0.815
scaffold_30000002.1 Arabidopsis lyrata scaffold_30000002.1 N 0.815
e_gw1.12.147.1 Ostreococcus RCC809 e_gw1.12.147.1 N 0.815
SOCG_00229 Schizosaccharomyces octosporus SOCG_00229 N 0.815
15643_YLR323C Saccharomyces paradoxus 15643_YLR323C N 0.815
PredSwiss_CON4272.1 Pneumocystis carinii PredSwiss_CON4272.1 N 0.815
CAGL0A00935g Candida glabrata CAGL0A00935g N 0.815
THAPSDRAFT_25179 Thalassiosira pseudonana Thaps25179 N 0.815
15153_YLR323C Saccharomyces mikatae 15153_YLR323C N 0.815
EDI_078670 Entamoeba dispar EDI_078670 N 0.778
EHI_192080 Entamoeba histolytica EHI_192080 N 0.778
HCAG_02941 Histoplasma capsulatum HCAG_02941 N 0.778
CAOG_06860 Capsaspora owczarzaki CAOG_06860 N 0.778
ZYRO0G10956g Zygosaccharomyces rouxii ZYRO0G10956g N 0.778
FGSG_08901 Fusarium graminearum FGSG_08901 N 0.778
Ppa-tag-331 Pristionchus pacificus PPA25510 N 0.778
BDBG_04068 Blastomyces dermatitidis BDBG_04068 N 0.778
rnf-113 Caenorhabditis elegans K01G5.1 N 0.778
An02g05190 Aspergillus niger CADANGAG00002035 N 0.778
CJA02847 Caenorhabditis japonica CJA02847 N 0.778
EFA78387.1 Polysphondylium pallidum EFA78387.1 N 0.778
PF14_0416 Plasmodium falciparum PF14_0416 N 0.778
e_gw1.00866.533.1 Aspergillus carbonarius e_gw1.00866.533.1 N 0.778
CRE04837 Caenorhabditis remanei CRE04837 N 0.778
16613_YLR323C Saccharomyces bayanus 16613_YLR323C N 0.778
PBANKA_130770 Plasmodium berghei PBANKA_130770 N 0.778
PCHAS_131090 Plasmodium chabaudi PCHAS_131090 N 0.778
PY01907 Plasmodium yoelii PY01907 N 0.778
CBN12332 Caenorhabditis brenneri CBN12332 N 0.778
e_gw1.32.54.1 Fragilariopsis cylindrus e_gw1.32.54.1 N 0.778
ANIA_07755 Aspergillus nidulans CADANIAG00000892 N 0.778
fgeneshDP_pg.C_scaffold_172000011 Dictyostelium purpureum fgeneshDP_pg.C_scaffold_172000011 N 0.778
CBG18314 Caenorhabditis briggsae CBG18314 N 0.778
PGUG_02083 Candida guilliermondii PGUG_02083 N 0.741
e_gw1.1.717.1 Myceliophthora thermophila e_gw1.1.717.1 N 0.741
PABG_00271 Paracoccidioides brasiliensis PABG_00271 N 0.741
estExt_fgenesh1_pm.C_chr_30248 Mycosphaerella graminicola estExt_fgenesh1_pm.C_chr_30248 N 0.741
MGYG_03604 Microsporum gypseum MGYG_03604 N 0.741
TRV_01821 Trichophyton verrucosum TRV_01821 N 0.741
LELG_01192 Lodderomyces elongisporus LELG_01192 N 0.741
TERG_03941 Trichophyton rubrum TERG_03941 N 0.741
TESG_00049 Trichophyton tonsurans TESG_00049 N 0.741
rnf113 Dictyostelium discoideum DDB_G0267870 N 0.741
e_gww1.2.1.1323.1 Pichia stipitis e_gww1.2.1.1323.1 N 0.741
PTRG_10816 Pyrenophora tritici repentis PTRG_10816 N 0.741
CTRG_01084 Candida tropicalis CTRG_01084 N 0.741
CLUG_01324 Candida lusitaniae CLUG_01324 N 0.741
VDAG_02435 Verticillium dahliae VDAG_02435 N 0.741
estExt_fgenesh1_pm.C_110126 Cryphonectria parasitica estExt_fgenesh1_pm.C_110126 N 0.741
ARB_03970 Arthroderma benhamiae ARB_03970 N 0.741
PMAA_037770 Penicillium marneffei PMAA_037770 N 0.741
GSTUMT00004845001 Tuber melanosporum GSTUMT00004845001 N 0.741
estExt_Genewise1.C_10555 Cochliobolus heterostrophus C5 estExt_Genewise1.C_10555 N 0.741
CPAG_04594 Candida parapsilosis CPAG_04594 N 0.741
Cd36_15260 Candida dubliniensis Cd36_15260 N 0.741
DEHA0A07084g Debaryomyces hansenii DEHA0A07084g N 0.741
TEQG_05573 Trichophyton equinum TEQG_05573 N 0.741
FOXG_03625 Fusarium oxysporum FOXG_03625 N 0.741
gw1.27.284.1 Neurospora tetrasperma gw1.27.284.1 N 0.704
gw1.1.1618.1 Thielavia terrestris gw1.1.1618.1 N 0.704
UREG_07314 Uncinocarpus reesii UREG_07314 N 0.704
estExt_fgenesh2_pg.C_20402 Neurospora discreta estExt_fgenesh2_pg.C_20402 N 0.704
estExt_Genewise1.C_11309 Trichoderma virens estExt_Genewise1.C_11309 N 0.704
NCU01954 Neurospora crassa NCU01954 N 0.704
ACLA_012790 Aspergillus clavatus CADACLAG00001301 N 0.704
MCYG_07006 Microsporum canis MCYG_07006 N 0.704
CHGG_06589 Chaetomium globosum CHGG_06589 N 0.704
CIMG_06140 Coccidioides immitis CIMG_06140 N 0.704
Pa_1_20620 Podospora anserina Pa_1_20620 N 0.704
Pc22g15470 Penicillium chrysogenum Pc22g15470 N 0.704
fgenesh1_pg.sca_2_chr3_3_0000871 Nectria haematococca fgenesh1_pg.sca_2_chr3_3_0000871 N 0.704
AFUA_5G07720 Aspergillus fumigatus CADAFUAG00006406 N 0.704
CPSG_00950 Coccidioides posadasii CPSG_00950 N 0.704
PTTG_01394 Puccinia triticina PTTG_01394 N 0.704
SNOG_16397 Stagonospora nodorum SNOG_16397 N 0.704
PGTG_01325 Puccinia graminis PGTG_01325 N 0.704
orf19.2105 Candida albicans orf19.2105 N 0.704
cassava26644.m1 Manihot esculenta cassava26644.m1 N 0.704
EAT76222.1 Phaeosphaeria nodorum EAT76222.1 N 0.704