CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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GRMZM2G373653
(
Zea mays
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
GRMZM2G373653
T05730_0.6
MaizeSequence (2009-Oct-16)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
GRMZM2G373653_P01
CCCH ZF
190
216
YQPDICKDYKETGYCGYGDSCKFMHDR
Links
Other
CCCH ZF
family RBPs
Other
Zea mays
RBPs
243 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
29577.m000447
Ricinus communis
29577.m000447
N
0.000
Glyma11g13490.1
Glycine max
Glyma11g13490.1
N
0.000
Glyma12g05490.1
Glycine max
Glyma12g05490.1
N
0.000
MDP0000252655
Malus x domestica
MDP0000252655
N
0.000
MDP0000252696
Malus x domestica
MDP0000252696
N
0.000
Medtr4g092490
Medicago truncatula
Medtr4g092490
N
0.000
PK10508.1
Cannabis sativa
PK10508.1
N
0.000
ppa000835m
Prunus persica
ppa000835m
N
0.000