CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Medtr4g092490
(
Medicago truncatula
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
Medtr4g092490
T54514_0.6
PlantGDB (2010-Oct-15)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Medtr4g092490.1
RRM
29
93
LYVANLSPDVTDSDLMDLFVQYGALDSVTSYSARNYAFVFFKRIDDAKAAKNALQGFNFRGNSLR
Medtr4g092490.1
RRM
106
170
LWVGGISPAVTKEDLEADFRKFGKVEDFKFFRDRNTACVEFFNLDDAIQAMKIMNGKHIGGENIR
Medtr4g092490.1
RRM
233
291
NVQIDEQMLHNAMILFGEIERIKSVPSRNFSFVEFRSVDEARRAKEGLQGRLFNDPHIT
Links
Other
RRM
family RBPs
Other
Medicago truncatula
RBPs
8 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Glyma12g05490.1
Glycine max
Glyma12g05490.1
N
0.841
Glyma11g13490.1
Glycine max
Glyma11g13490.1
N
0.841
PK10508.1
Cannabis sativa
PK10508.1
N
0.767
MDP0000252696
Malus x domestica
MDP0000252696
N
0.767
MDP0000252655
Malus x domestica
MDP0000252655
N
0.762
ppa000835m
Prunus persica
ppa000835m
N
0.757
29577.m000447
Ricinus communis
29577.m000447
N
0.735
Glyma13g42060.1
Glycine max
Glyma13g42060.1
N
0.709