CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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29577.m000447
(
Ricinus communis
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
29577.m000447
T48652_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
29577.m000447
RRM
24
88
LWVGNLAPDVTDSDLMDLFAKYGALDSVTTYSSRSYAFLYFKHVEDAAAAKDALQGTLLRGNPVK
29577.m000447
RRM
101
165
LWVGGISPAVSKEQLEEEFLKFGKIEEFKFLRDRNTAFIEYVKLEDALEAMRSMNGKRLGGDQIR
29577.m000447
RRM
214
272
SVQIDEQMLHNAMILFGEIERIKSFPARHYSFVEFRSVDEARRAKEGLQGRLFNDPRIS
Links
Other
RRM
family RBPs
Other
Ricinus communis
RBPs
8 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
PK10508.1
Cannabis sativa
PK10508.1
N
0.889
MDP0000252655
Malus x domestica
MDP0000252655
N
0.884
MDP0000252696
Malus x domestica
MDP0000252696
N
0.878
ppa000835m
Prunus persica
ppa000835m
N
0.873
Glyma12g05490.1
Glycine max
Glyma12g05490.1
N
0.799
Glyma11g13490.1
Glycine max
Glyma11g13490.1
N
0.794
Medtr4g092490
Medicago truncatula
Medtr4g092490
N
0.735
Glyma13g42060.1
Glycine max
Glyma13g42060.1
N
0.709