CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ZYRO0C17776g
(
Zygosaccharomyces rouxii
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
ZYRO0C17776g
T06683_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ZYRO0C17776g
CCCH ZF
29
58
PDRPVCEFYNPREGPSSCPRGASCPKKHVL
ZYRO0C17776g
CCCH ZF
64
87
KIVCKHWLRGLCKKNDQCEYLHEY
ZYRO0C17776g
CCCH ZF
90
116
RKMPECVFYSKNGYCTQTPECQYLHID
ZYRO0C17776g
CCCH ZF
119
139
SKIAPCEEYTMGFCPQGPNCK
ZYRO0C17776g
CCCH ZF
144
161
KKVLCPRYLTGFCPLGRR
Links
Other
CCCH ZF
family RBPs
Other
Zygosaccharomyces rouxii
RBPs
13 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CAOG_03505
Capsaspora owczarzaki
CAOG_03505
N
0.000
EDO05317.1
Babesia bovis
EDO05317.1
N
0.000
TA03875
Theileria annulata
TA03875
N
0.000
TGGT1_123910
Toxoplasma gondii
TGGT1_123910
N
0.000
TGME49_011020
Toxoplasma gondii
TGME49_011020
N
0.000
TGVEG_008880
Toxoplasma gondii
TGVEG_008880
N
0.000
TP03_0088
Theileria parva
TP03_0088
N
0.000