CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Q6DD06
(
Xenopus laevis
)
CCCH ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00642 (zf-CCCH)
IPR000571
Q6DD06
T06728_0.6
Xenbase (2010-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Q6DD06
CCCH ZF
101
126
PKSVVCAFFKQGQCTKGDKCKFSHDL
Links
Other
CCCH ZF
family RBPs
Other
Xenopus laevis
RBPs
144 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
estExt_fgenesh2_pg.C_90178
Agaricus bisporus
estExt_fgenesh2_pg.C_90178
N
0.000
EuGene10000246
Heterobasidion annosum
EuGene10000246
N
0.000
fgenesh3_pg.136__29
Postia placenta
fgenesh3_pg.136__29
N
0.000
genemark.11015_g
Pleurotus ostreatus
genemark.11015_g
N
0.000