CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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estExt_fgenesh2_pg.C_90178
(
Agaricus bisporus
)
La
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF05383 (La)
IPR006630
estExt_fgenesh2_pg.C_90178
T23154_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
estExt_fgenesh2_pg.C_90178
La
753
810
LLGQLEYYLSPQNMAQDLFLRRHMDSRGWISTSLLASFNRVKRLTQDPQLVREVLTYS
Links
Other
La
family RBPs
Other
Agaricus bisporus
RBPs
5 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
fgenesh3_pg.136__29
Postia placenta
fgenesh3_pg.136__29
N
0.776
EuGene10000246
Heterobasidion annosum
EuGene10000246
N
0.741
CC1G_15706
Coprinopsis cinerea
CC1G_15706
N
0.741
fgenesh1_pg.C_scaffold_5000405
Phanerochaete chrysosporium
fgenesh1_pg.C_scaffold_5000405
N
0.724
genemark.11015_g
Pleurotus ostreatus
genemark.11015_g
N
0.707