PTSG_02809 (Salpingoeca rosetta)
CCHC ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC) IPR001878 PTSG_02809 T08313_0.6 Broad (2011-Oct-27)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
PTSG_02809T0 CCHC ZF 685 702

Links

Other CCHC ZF family RBPs
Other Salpingoeca rosetta RBPs

4 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
30128.m009003 Ricinus communis 30128.m009003 N 0.000
emb1138 Arabidopsis thaliana AT5G26742-TAIR-G N 0.000
BGIOSIBCE013536 Oryza indica BGIOSIBCE013536 N 0.000
BRADI1G03180 Brachypodium distachyon BRADI1G03180 N 0.000
cassava12877.valid.m1 Manihot esculenta cassava12877.valid.m1 N 0.000
Cucsa.051030 Cucumis sativus Cucsa.051030 N 0.000
fgenesh1_kg.C_scaffold_15000078 Melampsora laricis populina fgenesh1_kg.C_scaffold_15000078 N 0.000
fgenesh1_kg.C_scaffold_2000119 Melampsora laricis populina fgenesh1_kg.C_scaffold_2000119 N 0.000
XM_002874266.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6002106 N 0.000
Glyma03g38550.1 Glycine max Glyma03g38550.1 N 0.000
Glyma19g41150.1 Glycine max Glyma19g41150.1 N 0.000
GRMZM2G163072 Zea mays GRMZM2G163072 N 0.000
GRMZM2G415491 Zea mays GRMZM2G415491 N 0.000
GSVIVG00031360001 Vitis vinifera GSVIVG00031360001 N 0.000
LjB06P23.40.nc Lotus japonicus LjB06P23.40.nc N 0.000
LOC_Os03g61220 Oryza sativa LOC_Os03g61220 N 0.000
Medtr1g103590 Medicago truncatula Medtr1g103590 N 0.000
Medtr7g134530 Medicago truncatula Medtr7g134530 N 0.000
mgf008200m Mimulus guttatus mgf008200m N 0.000
mgf012653m Mimulus guttatus mgf012653m N 0.000
B9N3Y9_POPTR Populus trichocarpa POPTR_0005s00200 N 0.000
B9N3Z3_POPTR Populus trichocarpa POPTR_0005s00240 N 0.000
ppa001778m Prunus persica ppa001778m N 0.000
Sb01g002660 Sorghum bicolor Sb01g002660 N 0.000
s_449296 Phytophthora sojae s_449296 N 0.000
s_472753 Phytophthora sojae s_472753 N 0.000