CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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DDX41
(
Oryzias latipes
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
ENSORLG00000006688
T10388_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSORLP00000008395
CCHC ZF
573
590
RGCTFCGGLGHRITDCPK
Links
Other
CCHC ZF
family RBPs
Other
Oryzias latipes
RBPs
79 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
LOC_Os04g21090
Oryza sativa
LOC_Os04g21090
N
0.000
LOC_Os05g18310
Oryza sativa
LOC_Os05g18310
N
0.000
LOC_Os05g27260
Oryza sativa
LOC_Os05g27260
N
0.000
LOC_Os05g51890
Oryza sativa
LOC_Os05g51890
N
0.000
LOC_Os09g17170
Oryza sativa
LOC_Os09g17170
N
0.000
LOC_Os10g14860
Oryza sativa
LOC_Os10g14860
N
0.000