estExt_Genewise1.C_10991 (Sporobolomyces roseus)
CCHC ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC) IPR001878 estExt_Genewise1.C_10991 T13658_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
estExt_Genewise1.C_10991 CCHC ZF 465 482

Links

Other CCHC ZF family RBPs
Other Sporobolomyces roseus RBPs

28 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
B9N0D8_POPTR Populus trichocarpa POPTR_0004s23270 N 0.722
POPTR_0015s03500 Populus trichocarpa POPTR_0015s03500 N 0.722
GSVIVG00017454001 Vitis vinifera GSVIVG00017454001 N 0.722
XM_002888366.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_2000621 N 0.722
DDX41 Tetraodon nigroviridis ENSTNIG00000008991 N 0.722
DDX41 Takifugu rubripes ENSTRUG00000004445 N 0.722
XM_002864058.1 Arabidopsis lyrata scaffold_801560.1 N 0.722
SNAPOd2T00004274001 Oikopleura dioica SNAPOd2T00004274001 N 0.722
cassava23082.valid.m1 Manihot esculenta cassava23082.valid.m1 N 0.722
Cucsa.105640 Cucumis sativus Cucsa.105640 N 0.722
cassava23081.valid.m1 Manihot esculenta cassava23081.valid.m1 N 0.722
78123 Helobdella robusta 78123 N 0.722
29171.m000268 Ricinus communis 29171.m000268 N 0.722
DDX41 Oryzias latipes ENSORLG00000006688 N 0.722
DDX41 Monodelphis domestica ENSMODG00000004714 N 0.722
mgf002732m Mimulus guttatus mgf002732m N 0.722
Medtr1g121690 Medicago truncatula Medtr1g121690 N 0.722
Glyma03g39670.1 Glycine max Glyma03g39670.1 N 0.722
fgeneshPB_pg.72__34 Phycomyces blakesleeanus fgeneshPB_pg.72__34 N 0.722
fgenesh2_pg.C_sca_40000169 Lottia gigantea fgenesh2_pg.C_sca_40000169 N 0.722
Medtr1g122060 Medicago truncatula Medtr1g122060 N 0.722
chr2.LjT16G06.70.nd Lotus japonicus chr2.LjT16G06.70.nd N 0.722
DDX41 Gasterosteus aculeatus ENSGACG00000018334 N 0.722
DDX41 Macropus eugenii ENSMEUG00000014375 N 0.722
AT5G51280 Arabidopsis thaliana AT5G51280-TAIR-G N 0.722
UM04587 Ustilago maydis UM04587 N 0.722
ppa003295m Prunus persica ppa003295m N 0.722
estExt_Genewise1.C_3700007 Capitella teleta estExt_Genewise1.C_3700007 N 0.722