POPTR_0015s03500 (Populus trichocarpa)
CCHC ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC) IPR001878 POPTR_0015s03500 T12742_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0015s03500.1 CCHC ZF 94 111

Links

Other CCHC ZF family RBPs
Other Populus trichocarpa RBPs

79 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
mgf002732m Mimulus guttatus mgf002732m N 0.889
Glyma03g39670.1 Glycine max Glyma03g39670.1 N 0.889
GSVIVG00017454001 Vitis vinifera GSVIVG00017454001 N 0.889
Medtr1g121690 Medicago truncatula Medtr1g121690 N 0.889
Medtr1g122060 Medicago truncatula Medtr1g122060 N 0.889
ppa003295m Prunus persica ppa003295m N 0.889
chr2.LjT16G06.70.nd Lotus japonicus chr2.LjT16G06.70.nd N 0.889
AT5G51280 Arabidopsis thaliana AT5G51280-TAIR-G N 0.889
XM_002888366.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_2000621 N 0.889
29171.m000268 Ricinus communis 29171.m000268 N 0.889
XM_002864058.1 Arabidopsis lyrata scaffold_801560.1 N 0.889
B9N0D8_POPTR Populus trichocarpa POPTR_0004s23270 N 0.889
cassava23081.valid.m1 Manihot esculenta cassava23081.valid.m1 N 0.889
cassava23082.valid.m1 Manihot esculenta cassava23082.valid.m1 N 0.889
Cucsa.105640 Cucumis sativus Cucsa.105640 N 0.889
XP_002160326.1 Hydra magnipapillata XP_002160326.1 N 0.833
SNAPOd2T00004274001 Oikopleura dioica SNAPOd2T00004274001 N 0.833
PDK_20s1987451g001 Phoenix dactylifera PDK_20s1987451g001 N 0.833
estExt_gwp.C_560110 Branchiostoma floridae estExt_gwp.C_560110 N 0.833
amel4_ncbi_hmm26429 Apis mellifera amel4_ncbi_hmm26429 N 0.833
fgenesh2_pg.scaffold_54000122 Branchiostoma floridae fgenesh2_pg.scaffold_54000122 N 0.833
nasonia_NCBI_hmm412924 Nasonia vitripennis nasonia_NCBI_hmm412924 N 0.833
Aqu1.208454 Amphimedon queenslandica Aqu1.208454 N 0.833
DDX41 Otolemur garnettii ENSOGAG00000011123 N 0.778
DDX41 Ochotona princeps ENSOPRG00000016604 N 0.778
DDX41 Ornithorhynchus anatinus ENSOANG00000009671 N 0.778
Ddx41 Mus musculus ENSMUSG00000021494 N 0.778
DDX41 Microcebus murinus ENSMICG00000007919 N 0.778
DDX41 Loxodonta africana ENSLAFG00000026418 N 0.778
DDX41 Gorilla gorilla ENSGGOG00000014484 N 0.778
DDX41 Meleagris gallopavo ENSMGAG00000004050 N 0.778
DDX41 Procavia capensis ENSPCAG00000009363 N 0.778
DDX41 Myotis lucifugus ENSMLUG00000006610 N 0.778
DDX41 Macaca mulatta ENSMMUG00000016911 N 0.778
DDX41 Spermophilus tridecemlineatus ENSSTOG00000003171 N 0.778
DDX41 Taeniopygia guttata ENSTGUG00000000413 N 0.778
fam193b Xenopus tropicalis ENSXETG00000007238 N 0.778
ISCW016533 Ixodes scapularis ISCW016533 N 0.778
LOC_Os02g05660 Oryza sativa LOC_Os02g05660 N 0.778
DDX41 Tupaia belangeri ENSTBEG00000002862 N 0.778
DDX41 Gallus gallus ENSGALG00000003030 N 0.778
DDX41 Pan troglodytes ENSPTRG00000017589 N 0.778
DDX41 Pteropus vampyrus ENSPVAG00000007784 N 0.778
Ddx41 Rattus norvegicus ENSRNOG00000012771 N 0.778
RGD1559513 Rattus norvegicus ENSRNOG00000024826 N 0.778
ENSPPYG00000016097 Pongo pygmaeus ENSPPYG00000016097 N 0.778
ENSCPOG00000008770 Cavia porcellus ENSCPOG00000008770 N 0.778
DGIL_AUG5s13610g5t1 Acyrtosiphon pisum DGIL_AUG5s13610g5t1 N 0.778
CAOG_05012 Capsaspora owczarzaki CAOG_05012 N 0.778
BGIOSIBCE005629 Oryza indica BGIOSIBCE005629 N 0.778
BRADI3G03990 Brachypodium distachyon BRADI3G03990 N 0.778
A3KN07_BOVIN Bos taurus ENSBTAG00000015187 N 0.778
Ame_R016826 Ailuropoda melanoleuca Ame_R016826 N 0.778
GRMZM2G043724 Zea mays GRMZM2G043724 N 0.778
78123 Helobdella robusta 78123 N 0.778
estExt_Genewise1.C_3700007 Capitella teleta estExt_Genewise1.C_3700007 N 0.778
fgenesh1_pg.scaffold_24000032 Monosiga brevicollis fgenesh1_pg.scaffold_24000032 N 0.778
fgenesh2_pg.C_sca_40000169 Lottia gigantea fgenesh2_pg.C_sca_40000169 N 0.778
DDX41 Canis familiaris ENSCAFG00000016304 N 0.778
DDX41 Anolis carolinensis ENSACAG00000005778 N 0.778
DDX41 Erinaceus europaeus ENSEEUG00000001733 N 0.778
A6ML97_CALJA Callithrix jacchus ENSCJAG00000006595 N 0.778
DDX41 Felis catus ENSFCAG00000001542 N 0.778
DDX41 Homo sapiens ENSG00000183258 N 0.778
LOC100058316 Equus caballus ENSECAG00000009688 N 0.778
ENSETEG00000012955 Echinops telfairi ENSETEG00000012955 N 0.778
Ddx41 Dipodomys ordii ENSDORG00000010781 N 0.778
SB01G035760 Sorghum bicolor Sb01g035760 N 0.778
estExt_Genewise1Plus.C_12358 Mucor circinelloides estExt_Genewise1Plus.C_12358 N 0.722
DDX41 Gasterosteus aculeatus ENSGACG00000018334 N 0.722
estExt_Genewise1.C_10991 Sporobolomyces roseus estExt_Genewise1.C_10991 N 0.722
ENSETEG00000013165 Echinops telfairi ENSETEG00000013165 N 0.722
DDX41 Oryzias latipes ENSORLG00000006688 N 0.722
DDX41 Takifugu rubripes ENSTRUG00000004445 N 0.722
DDX41 Monodelphis domestica ENSMODG00000004714 N 0.722
fgeneshPB_pg.72__34 Phycomyces blakesleeanus fgeneshPB_pg.72__34 N 0.722
DDX41 Tetraodon nigroviridis ENSTNIG00000008991 N 0.722
RO3G_01360 Rhizopus oryzae RO3G_01360 N 0.722
DDX41 Macropus eugenii ENSMEUG00000014375 N 0.722