fgenesh1_pg.C_scaffold_55000099 (Daphnia pulex)
CCHC ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC) IPR001878 fgenesh1_pg.C_scaffold_55000099 T13999_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pg.C_scaffold_55000099 CCHC ZF 432 449

Links

Other CCHC ZF family RBPs
Other Daphnia pulex RBPs

14 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AMAG_03037 Allomyces macrogynus AMAG_03037 N 0.000
AMAG_10316 Allomyces macrogynus AMAG_10316 N 0.000
CC1G_04203 Coprinopsis cinerea CC1G_04203 N 0.000
CNBG_2621 Cryptococcus neoformans CNBG_2621 N 0.000
estExt_fgenesh1_pm.C_80030 Sporobolomyces roseus estExt_fgenesh1_pm.C_80030 N 0.000
estExt_fgenesh2_kg.C_20318 Agaricus bisporus estExt_fgenesh2_kg.C_20318 N 0.000
estExt_fgenesh2_pg.C_60255 Schizophyllum commune estExt_fgenesh2_pg.C_60255 N 0.000
estExt_fgenesh3_kg.C_20205 Heterobasidion annosum estExt_fgenesh3_kg.C_20205 N 0.000
estExt_fgeneshMC_pm.C_20555 Mucor circinelloides estExt_fgeneshMC_pm.C_20555 N 0.000
estExt_fgeneshPB_pm.C_440010 Phycomyces blakesleeanus estExt_fgeneshPB_pm.C_440010 N 0.000
estExt_genemark.C_11050 Pleurotus ostreatus estExt_genemark.C_11050 N 0.000
estExt_Genewise1.C_240149 Phycomyces blakesleeanus estExt_Genewise1.C_240149 N 0.000
estExt_Genewise1Plus.C_1210056 Postia placenta estExt_Genewise1Plus.C_1210056 N 0.000
estExt_Genewise1Plus.C_21802 Schizophyllum commune estExt_Genewise1Plus.C_21802 N 0.000
e_gwh2.1.218.1 Phanerochaete chrysosporium e_gwh2.1.218.1 N 0.000
gww1.8.38.1 Laccaria bicolor gww1.8.38.1 N 0.000
PGTG_10266 Puccinia graminis PGTG_10266 N 0.000
RO3G_03072 Rhizopus oryzae RO3G_03072 N 0.000
RO3G_08705 Rhizopus oryzae RO3G_08705 N 0.000
RO3G_11747 Rhizopus oryzae RO3G_11747 N 0.000
pab1 Schizosaccharomyces pombe SPAC57A7.04c N 0.000
SPOG_04913 Schizosaccharomyces cryophilus SPOG_04913 N 0.000
SPPG_01610 Spizellomyces punctatus SPPG_01610 N 0.000