CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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chr1.CM1875.130.nc
(
Lotus japonicus
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
chr1.CM1875.130.nc
T15276_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
chr1.CM1875.130.nc
CCHC ZF
889
906
NVCWKCGKPGHYANKCKT
Links
Other
CCHC ZF
family RBPs
Other
Lotus japonicus
RBPs
12 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
cassava3117.m1
Manihot esculenta
cassava3117.m1
N
0.722
cassava33153.m1
Manihot esculenta
cassava33153.m1
N
0.722
cassava34578.m1
Manihot esculenta
cassava34578.m1
N
0.778
cassava44276.m1
Manihot esculenta
cassava44276.m1
N
0.722
cassava4845.m1
Manihot esculenta
cassava4845.m1
N
0.722
cassava9322.m1
Manihot esculenta
cassava9322.m1
N
0.722
LjSGA_054608.1.1
Lotus japonicus
LjSGA_054608.1.1
N
1.000
mgf019326m
Mimulus guttatus
mgf019326m
N
0.722
mgf020111m
Mimulus guttatus
mgf020111m
N
0.722
mgf020201m
Mimulus guttatus
mgf020201m
N
0.722
mgf021643m
Mimulus guttatus
mgf021643m
N
0.722
mgf026139m
Mimulus guttatus
mgf026139m
N
0.722