cassava9322.m1 (Manihot esculenta)
CCHC ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC) IPR001878 cassava9322.m1 T13475_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava9322.m1 CCHC ZF 3 20

Links

Other CCHC ZF family RBPs
Other Manihot esculenta RBPs

23 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
cassava31886.m1 Manihot esculenta cassava31886.m1 N 0.889
cassava4349.m1 Manihot esculenta cassava4349.m1 N 0.889
cassava4845.m1 Manihot esculenta cassava4845.m1 N 0.889
cassava3938.m1 Manihot esculenta cassava3938.m1 N 0.889
cassava16460.m1 Manihot esculenta cassava16460.m1 N 0.833
cassava38767.m1 Manihot esculenta cassava38767.m1 N 0.833
cassava33875.m1 Manihot esculenta cassava33875.m1 N 0.833
AT2G15650 Arabidopsis thaliana AT2G15650-TAIR-G N 0.833
cassava9619.m1 Manihot esculenta cassava9619.m1 N 0.833
cassava34578.m1 Manihot esculenta cassava34578.m1 N 0.833
AT1G35115 Arabidopsis thaliana AT1G35115-TAIR-G N 0.833
AT1G50810 Arabidopsis thaliana AT1G50810-TAIR-G N 0.833
cassava38763.m1 Manihot esculenta cassava38763.m1 N 0.778
cassava44276.m1 Manihot esculenta cassava44276.m1 N 0.778
cassava33153.m1 Manihot esculenta cassava33153.m1 N 0.778
cassava15406.m1 Manihot esculenta cassava15406.m1 N 0.778
cassava33793.m1 Manihot esculenta cassava33793.m1 N 0.778
cassava3117.m1 Manihot esculenta cassava3117.m1 N 0.778
cassava9497.m1 Manihot esculenta cassava9497.m1 N 0.778
chr1.CM1875.130.nc Lotus japonicus chr1.CM1875.130.nc N 0.722
cassava45216.m1 Manihot esculenta cassava45216.m1 N 0.722
LjSGA_054608.1.1 Lotus japonicus LjSGA_054608.1.1 N 0.722
cassava38772.m1 Manihot esculenta cassava38772.m1 N 0.722