cassava3117.m1 (Manihot esculenta)
CCHC ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00098 (zf-CCHC) IPR001878 cassava3117.m1 T13390_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava3117.m1 CCHC ZF 86 103

Links

Other CCHC ZF family RBPs
Other Manihot esculenta RBPs

16 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
cassava34578.m1 Manihot esculenta cassava34578.m1 N 0.833
cassava31886.m1 Manihot esculenta cassava31886.m1 N 0.778
cassava4845.m1 Manihot esculenta cassava4845.m1 N 0.778
cassava9322.m1 Manihot esculenta cassava9322.m1 N 0.778
cassava44276.m1 Manihot esculenta cassava44276.m1 N 0.778
LjSGA_054608.1.1 Lotus japonicus LjSGA_054608.1.1 N 0.722
chr1.CM1875.130.nc Lotus japonicus chr1.CM1875.130.nc N 0.722
cassava16460.m1 Manihot esculenta cassava16460.m1 N 0.722
cassava9619.m1 Manihot esculenta cassava9619.m1 N 0.722
cassava3938.m1 Manihot esculenta cassava3938.m1 N 0.722
cassava33793.m1 Manihot esculenta cassava33793.m1 N 0.722
cassava33153.m1 Manihot esculenta cassava33153.m1 N 0.722
cassava33875.m1 Manihot esculenta cassava33875.m1 N 0.722
cassava38763.m1 Manihot esculenta cassava38763.m1 N 0.722
cassava38767.m1 Manihot esculenta cassava38767.m1 N 0.722
cassava4349.m1 Manihot esculenta cassava4349.m1 N 0.722