CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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gw1.25.107.1
(
Phytophthora capsici
)
CCHC ZF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00098 (zf-CCHC)
IPR001878
gw1.25.107.1
T15875_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
gw1.25.107.1
CCHC ZF
130
147
ATCHRCKKVGHIAPNCPS
Links
Other
CCHC ZF
family RBPs
Other
Phytophthora capsici
RBPs
12 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CG14230
Drosophila melanogaster
FBgn0031062
N
0.000
GF20211
Drosophila ananassae
FBgn0097218
N
0.000
GM22984
Drosophila sechellia
FBgn0177852
N
0.000
GD17457
Drosophila simulans
FBgn0189010
N
0.000
GE15868
Drosophila yakuba
FBgn0233429
N
0.000