CSDA (Procavia capensis)
CSD

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00313 (CSD) IPR002059 ENSPCAG00000001397 T16969_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
YB-1
M111_0.6 		Homo sapiens AACAUCD RNAcompete
Ray et al.(2013)
RNCMPT00116 		0.930
YB-1
M081_0.6 		Homo sapiens AACAUC RNAcompete
Ray et al.(2013)
RNCMPT00083 		0.930
ybx2-a
M260_0.6 		Xenopus laevis GCCANACCAYCGC SELEX
Cook et al.(2011)
130_11376140 		0.861
ybx2-a
M254_0.6 		Xenopus laevis KAACAUCU SELEX
Cook et al.(2011)
115_7499328 		0.861
ybx2-a
M250_0.6 		Xenopus laevis UAACAUC SELEX
Cook et al.(2011)
114_7499328 		0.861
YBX2
M082_0.6 		Homo sapiens AACAWCD RNAcompete
Ray et al.(2013)
RNCMPT00084 		0.861
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSPCAP00000001286 CSD 86 155

Links

Other CSD family RBPs
Other Procavia capensis RBPs

181 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Ame_R007082 Ailuropoda melanoleuca Ame_R007082 N 0.000
RBM15B Canis familiaris ENSCAFG00000010266 N 0.000
RBM15B Homo sapiens ENSG00000179837 N 0.000
RBM15 Gasterosteus aculeatus ENSGACG00000007932 N 0.000
RBM15B Macaca mulatta ENSMMUG00000004279 N 0.000
RBM15 Oryzias latipes ENSORLG00000006197 N 0.000
RBM15B Pan troglodytes ENSPTRG00000014972 N 0.000
RBM15B Pteropus vampyrus ENSPVAG00000003221 N 0.000
RBM15B Sus scrofa ENSSSCG00000011420 N 0.000
RBM15B Tetraodon nigroviridis ENSTNIG00000002438 N 0.000
RBM15 Takifugu rubripes ENSTRUG00000002921 N 0.000
RBM15B Tursiops truncatus ENSTTRG00000001431 N 0.000
rbm15b Xenopus tropicalis ENSXETG00000000072 N 0.000