CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Ame_R007082
(
Ailuropoda melanoleuca
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
Ame_R007082
T55542_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Ame_R007082
RRM
46
104
PALPAEHLEDRLFHQFKRFGEISLRLSHTPELGRVAYVNFRHPQDAREARQHALARQLX
Ame_R007082
RRM
183
252
LFIGNLDHSVSEVELRRAFEKYGIIEEVVIKRPARGQGGAYAFLKFQNLDMAHRAKVAMSGRVIGRNPIK
Ame_R007082
RRM
264
326
LWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGDSFAYIQYESLDAAQAACAKMRGFPLGGPD
Links
Other
RRM
family RBPs
Other
Ailuropoda melanoleuca
RBPs
11 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
RBM15B
Canis familiaris
ENSCAFG00000010266
N
0.995
RBM15B
Sus scrofa
ENSSSCG00000011420
N
0.995
RBM15B
Tursiops truncatus
ENSTTRG00000001431
N
0.995
RBM15B
Macaca mulatta
ENSMMUG00000004279
N
0.995
RBM15B
Pan troglodytes
ENSPTRG00000014972
N
0.995
RBM15B
Homo sapiens
ENSG00000179837
N
0.995
RBM15B
Pteropus vampyrus
ENSPVAG00000003221
N
0.990
RBM15B
Cavia porcellus
ENSCPOG00000026615
N
0.974
RBM15B
Tupaia belangeri
ENSTBEG00000008724
N
0.807
rbm15b
Xenopus tropicalis
ENSXETG00000000072
N
0.728
RBM15B
Gasterosteus aculeatus
ENSGACG00000001575
N
0.718