CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ENSSARG00000007287
(
Sorex araneus
)
KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
IPR018111
ENSSARG00000007287
T19471_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
ANKHD1
M002_0.6
Homo sapiens
AGACGWW
RNAcompete
Ray et al.(2013)
RNCMPT00002
0.984
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSSARP00000006652
KH
1697
1759
SKKLSVPASVVSRIMGRGGCNITAIQDVTGAHIDVDKQKDKNGERMITIRGDTESTRYAVQLI
Links
Other
KH
family RBPs
Other
Sorex araneus
RBPs
70 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AAEL009694
Aedes aegypti
AAEL009694
N
0.000
AGAP003356
Anopheles gambiae
AGAP003356
N
0.000
amel4_ncbi_hmm3083
Apis mellifera
amel4_ncbi_hmm3083
N
0.000
BGIBMGA014155
Bombyx mori
BGIBMGA014155
N
0.000
CPIJ014324
Culex quinquefasciatus
CPIJ014324
N
0.000
DGIL_AUG5s14032g4t1
Acyrtosiphon pisum
DGIL_AUG5s14032g4t1
N
0.000
CG10384
Drosophila melanogaster
FBgn0034731
N
0.000
GA10291-RA
Drosophila pseudoobscura
FBgn0070349
N
0.000
GF11894
Drosophila ananassae
FBgn0088934
N
0.000
GG21049
Drosophila erecta
FBgn0113232
N
0.000
GH21368
Drosophila grimshawi
FBgn0128830
N
0.000
GI20563
Drosophila mojavensis
FBgn0143299
N
0.000
GM15914
Drosophila sechellia
FBgn0170830
N
0.000
GJ19910
Drosophila virilis
FBgn0207052
N
0.000
GK17902
Drosophila willistoni
FBgn0219901
N
0.000
GE13991
Drosophila yakuba
FBgn0231623
N
0.000
nasonia_NCBI_hmm272534
Nasonia vitripennis
nasonia_NCBI_hmm272534
N
0.000