PCBP3 (Tetraodon nigroviridis)
KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00013 (KH_1) IPR018111 ENSTNIG00000008872 T19607_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
Pcbp3
M188_0.6 		Mus musculus UUUYCC RNAcompete
Ray et al.(2013)
RNCMPT00215 		0.789
PCBP2
M043_0.6 		Homo sapiens CCYYCCH RNAcompete
Ray et al.(2013)
RNCMPT00044 		0.711
pcbp2
M211_0.6 		Danio rerio WWUCCC RNAcompete
Ray et al.(2013)
RNCMPT00246 		0.705
Pcbp1
M207_0.6 		Mus musculus CYUUCC RNAcompete
Ray et al.(2013)
RNCMPT00239 		0.700
PCBP1
M177_0.6 		Homo sapiens CCWWHCC RNAcompete
Ray et al.(2013)
RNCMPT00186 		0.700
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTNIP00000000897 KH 17 79
ENSTNIP00000000897 KH 103 135
ENSTNIP00000000897 KH 247 309
ENSTNIP00000003311 KH 17 79
ENSTNIP00000003311 KH 103 134
ENSTNIP00000003311 KH 259 321
ENSTNIP00000003568 KH 17 79
ENSTNIP00000003568 KH 103 133
ENSTNIP00000003568 KH 262 324
ENSTNIP00000011725 KH 17 79
ENSTNIP00000011725 KH 103 135
ENSTNIP00000011725 KH 270 332

Links

Other KH family RBPs
Other Tetraodon nigroviridis RBPs

75 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
FOXG_03077 Fusarium oxysporum FOXG_03077 N 0.000
FVEG_01941 Fusarium verticillioides FVEG_01941 N 0.000
gw1.2.1197.1 Nectria haematococca gw1.2.1197.1 N 0.000