CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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PCBP3
(
Tetraodon nigroviridis
)
KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
IPR018111
ENSTNIG00000008872
T19607_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
Pcbp3
M188_0.6
Mus musculus
UUUYCC
RNAcompete
Ray et al.(2013)
RNCMPT00215
0.789
PCBP2
M043_0.6
Homo sapiens
CCYYCCH
RNAcompete
Ray et al.(2013)
RNCMPT00044
0.711
pcbp2
M211_0.6
Danio rerio
WWUCCC
RNAcompete
Ray et al.(2013)
RNCMPT00246
0.705
Pcbp1
M207_0.6
Mus musculus
CYUUCC
RNAcompete
Ray et al.(2013)
RNCMPT00239
0.700
PCBP1
M177_0.6
Homo sapiens
CCWWHCC
RNAcompete
Ray et al.(2013)
RNCMPT00186
0.700
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSTNIP00000000897
KH
17
79
TIRLLMHGKEVGSIIGKKGETVKKMREEIKSGARINISEGNCPERIVTITGPTDTIFKAFAMI
ENSTNIP00000000897
KH
103
135
TLRLVVPASQCGSLIGKGGSKIKEMRESTAGPV
ENSTNIP00000000897
KH
247
309
THELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANAMEGSSERQITITGTPANISLAQYLI
ENSTNIP00000003311
KH
17
79
TIRLLMHGKEVGSIIGKKGETVKKMREEIKSGARINISEGNCPERIVTITGPTDTIFKAFAMI
ENSTNIP00000003311
KH
103
134
TLRLVVPASQCGSLIGKGGSKIKEMRESTAGP
ENSTNIP00000003311
KH
259
321
THELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANAMEGSSERQITITGTPANISLAQYLI
ENSTNIP00000003568
KH
17
79
TIRLLMHGKEVGSIIGKKGETVKKMREEIKSGARINISEGNCPERIVTITGPTDTIFKAFAMI
ENSTNIP00000003568
KH
103
133
TLRLVVPASQCGSLIGKGGSKIKEMRESTAG
ENSTNIP00000003568
KH
262
324
THELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANAMEGSSERQITITGTPANISLAQYLI
ENSTNIP00000011725
KH
17
79
TIRLLMHGKEVGSIIGKKGETVKKMREEIKSGARINISEGNCPERIVTITGPTDTIFKAFAMI
ENSTNIP00000011725
KH
103
135
TLRLVVPASQCGSLIGKGGSKIKEMRESTAGPV
ENSTNIP00000011725
KH
270
332
THELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANAMEGSSERQITITGTPANISLAQYLI
Links
Other
KH
family RBPs
Other
Tetraodon nigroviridis
RBPs
75 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
FOXG_03077
Fusarium oxysporum
FOXG_03077
N
0.000
FVEG_01941
Fusarium verticillioides
FVEG_01941
N
0.000
gw1.2.1197.1
Nectria haematococca
gw1.2.1197.1
N
0.000