pcbp2 (Danio rerio)
KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00013 (KH_1) IPR018111 ENSDARG00000013184 T18614_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
pcbp2
M211_0.6		 Danio rerio WWUCCC RNAcompete
Ray et al.(2013)
RNCMPT00246 		(Direct)

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PCBP2
M043_0.6 		Homo sapiens CCYYCCH RNAcompete
Ray et al.(2013)
RNCMPT00044 		0.957
PCBP1
M177_0.6 		Homo sapiens CCWWHCC RNAcompete
Ray et al.(2013)
RNCMPT00186 		0.910
Pcbp1
M207_0.6 		Mus musculus CYUUCC RNAcompete
Ray et al.(2013)
RNCMPT00239 		0.910
Pcbp3
M188_0.6 		Mus musculus UUUYCC RNAcompete
Ray et al.(2013)
RNCMPT00215 		0.883
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M211_0.6 KH 15 75
M211_0.6 KH 99 162
M211_0.6 KH 242 304

RNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000003163 KH 15 75
ENSDARP00000003163 KH 99 162
ENSDARP00000003163 KH 242 304

Links

Other KH family RBPs
Other Danio rerio RBPs

126 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSORLG00000005176 Oryzias latipes ENSORLG00000005176 I 0.979
ENSGACG00000006681 Gasterosteus aculeatus ENSGACG00000006681 I 0.968
CAB50743 Xenopus laevis CAB50743 I 0.963
AAH84195 Xenopus laevis AAH84195 I 0.963
pcbp3 Xenopus tropicalis ENSXETG00000012658 I 0.963
ENSTRUG00000009361 Takifugu rubripes ENSTRUG00000009361 I 0.963
ENSTRUG00000011419 Takifugu rubripes ENSTRUG00000011419 I 0.963
CAD29864 Xenopus laevis CAD29864 I 0.963
AAH41241 Xenopus laevis AAH41241 I 0.963
PCBP2 Sus scrofa ENSSSCG00000000274 I 0.957
PCBP2 Ochotona princeps ENSOPRG00000004680 I 0.957
PCBP1 Tetraodon nigroviridis ENSTNIG00000012585 I 0.957
PCBP2 Dasypus novemcinctus ENSDNOG00000008688 I 0.957
ENSLAFG00000013187 Loxodonta africana ENSLAFG00000013187 I 0.957
PCBP2 Pteropus vampyrus ENSPVAG00000012284 I 0.957
PCBP2 Macaca mulatta ENSMMUG00000006608 I 0.957
PCBP2 Procavia capensis ENSPCAG00000005154 I 0.957
ENSORLG00000012872 Oryzias latipes ENSORLG00000012872 I 0.957
ENSPPYG00000004581 Pongo pygmaeus ENSPPYG00000004581 I 0.957
PCBP2 Pan troglodytes ENSPTRG00000005018 I 0.957
PCBP2 Microcebus murinus ENSMICG00000011651 I 0.957
Pcbp2 Mus musculus ENSMUSG00000056851 I 0.957
PCBP2 Gorilla gorilla ENSGGOG00000012613 I 0.957
ENSACAG00000000783 Anolis carolinensis ENSACAG00000000783 I 0.957
PCBP2 Homo sapiens ENSG00000197111 D 0.957
Q3SYT9_BOVIN Bos taurus ENSBTAG00000020757 I 0.957
PCBP2 Equus caballus ENSECAG00000022389 I 0.957
ENSOCUG00000022490 Oryctolagus cuniculus ENSOCUG00000022490 I 0.957
ENSMODG00000000280 Monodelphis domestica ENSMODG00000000280 I 0.957
PCBP2 Tursiops truncatus ENSTTRG00000017174 I 0.957
ENSCPOG00000000967 Cavia porcellus ENSCPOG00000000967 I 0.957
PCBP2 Canis familiaris ENSCAFG00000006821 I 0.957
ENSCJAG00000034075 Callithrix jacchus ENSCJAG00000034075 I 0.952
LOC100392590 Callithrix jacchus ENSCJAG00000018590 I 0.947
ENSGACG00000003197 Gasterosteus aculeatus ENSGACG00000003197 I 0.941
PCBP1_RABIT Oryctolagus cuniculus ENSOCUG00000003634 I 0.910
PCBP2 Tarsius syrichta ENSTSYG00000009771 I 0.910
PCBP1_BOVIN Bos taurus ENSBTAG00000008985 I 0.910
PCBP1 Cavia porcellus ENSCPOG00000013511 I 0.910
Ame_R002707 Ailuropoda melanoleuca Ame_R002707 I 0.910
Pcbp1 Mus musculus ENSMUSG00000051695 D 0.910
Pcbp1 Rattus norvegicus ENSRNOG00000017708 I 0.910
PCBP1 Pan troglodytes ENSPTRG00000012025 I 0.910
ENSPPYG00000012328 Pongo pygmaeus ENSPPYG00000012328 I 0.910
PCBP1 Myotis lucifugus ENSMLUG00000014173 I 0.910
PCBP1 Homo sapiens ENSG00000169564 D 0.910
PCBP1 Gorilla gorilla ENSGGOG00000028130 I 0.910
LOC100050579 Equus caballus ENSECAG00000002544 I 0.910
PCBP3-2 Taeniopygia guttata ENSTGUG00000008158 I 0.894
PCBP3 Gallus gallus ENSGALG00000013155 I 0.894
A6MKZ3_CALJA Callithrix jacchus ENSCJAG00000022539 I 0.894
LOC100409398 Callithrix jacchus ENSCJAG00000007694 I 0.888
ENSACAG00000009819 Anolis carolinensis ENSACAG00000009819 I 0.888
PCBP1 Canis familiaris ENSCAFG00000013845 I 0.888
Pcbp3 Rattus norvegicus ENSRNOG00000001245 I 0.883
PCBP3 Pan troglodytes ENSPTRG00000014010 I 0.883
PCBP3 Anolis carolinensis ENSACAG00000004607 I 0.883
PCBP3 Gorilla gorilla ENSGGOG00000003683 I 0.883
PCBP3 Tursiops truncatus ENSTTRG00000015075 I 0.883
PCBP3 Homo sapiens ENSG00000183570 I 0.883
LOC100408015 Callithrix jacchus ENSCJAG00000001903 I 0.883
PCBP3 Meleagris gallopavo ENSMGAG00000001883 I 0.883
LOC100050101 Equus caballus ENSECAG00000012413 I 0.883
PCBP3 Macaca mulatta ENSMMUG00000003825 I 0.883
PCBP3 Cavia porcellus ENSCPOG00000003648 I 0.883
PCBP3 Oryctolagus cuniculus ENSOCUG00000002696 I 0.883
Pcbp3 Mus musculus ENSMUSG00000001120 D 0.883
Q17QV0_BOVIN Bos taurus ENSBTAG00000030775 I 0.878
PCBP3 Takifugu rubripes ENSTRUG00000013604 I 0.872
PCBP3 Tetraodon nigroviridis ENSTNIG00000010615 I 0.872
PCBP3 Takifugu rubripes ENSTRUG00000006280 I 0.872
ENSMODG00000017748 Monodelphis domestica ENSMODG00000017748 I 0.872
PCBP3 Gasterosteus aculeatus ENSGACG00000002266 I 0.872
PCBP1 Callithrix jacchus ENSCJAG00000004017 I 0.872
PCBP2 Macropus eugenii ENSMEUG00000001887 I 0.867
PCBP3 Gasterosteus aculeatus ENSGACG00000014955 I 0.867
PCBP2 Echinops telfairi ENSETEG00000014741 I 0.858
Ame_R011627 Ailuropoda melanoleuca Ame_R011627 I 0.856
D4ADH2_RAT Rattus norvegicus ENSRNOG00000039295 I 0.847
ENSMGAG00000006794 Meleagris gallopavo ENSMGAG00000006794 I 0.846
PCBP3 Gallus gallus ENSGALG00000004394 I 0.846
ENSRNOG00000019487 Rattus norvegicus ENSRNOG00000019487 I 0.841
PCBP3 Macropus eugenii ENSMEUG00000012960 I 0.840
PCBP3 Oryzias latipes ENSORLG00000000059 I 0.836
PCBP3 Ochotona princeps ENSOPRG00000003431 I 0.832
PCBP2 Myotis lucifugus ENSMLUG00000009971 I 0.819
PCBP3 Loxodonta africana ENSLAFG00000020835 I 0.803
ENSORLG00000014385 Oryzias latipes ENSORLG00000014385 I 0.798
Ame_R007160 Ailuropoda melanoleuca Ame_R007160 I 0.793
PCBP3 Microcebus murinus ENSMICG00000012679 I 0.787
pcbp3 Danio rerio ENSDARG00000054378 I 0.787
PCBP3 Otolemur garnettii ENSOGAG00000008044 I 0.782
PCBP2 Tupaia belangeri ENSTBEG00000015592 I 0.777
PCBP1 Taeniopygia guttata ENSTGUG00000016232 I 0.777
D4A8D6_RAT Rattus norvegicus ENSRNOG00000006713 I 0.760
ENSGACG00000003044 Gasterosteus aculeatus ENSGACG00000003044 I 0.758
PCBP4 Tetraodon nigroviridis ENSTNIG00000017887 I 0.751
PCBP4 Takifugu rubripes ENSTRUG00000007426 I 0.751
ENSLAFG00000025534 Loxodonta africana ENSLAFG00000025534 I 0.751
PCBP3 Felis catus ENSFCAG00000014812 I 0.750
PCBP3 Myotis lucifugus ENSMLUG00000003074 I 0.750
PCBP4 Gasterosteus aculeatus ENSGACG00000002664 I 0.746
PCBP1 Otolemur garnettii ENSOGAG00000008557 I 0.746
ENSTRUG00000017789 Takifugu rubripes ENSTRUG00000017789 I 0.737
ENSMODG00000020653 Monodelphis domestica ENSMODG00000020653 I 0.735
PCBP3 Pteropus vampyrus ENSPVAG00000000832 I 0.734
PCBP4 Ornithorhynchus anatinus ENSOANG00000014110 I 0.726
fgenesh2_pg.scaffold_166000022 Branchiostoma floridae fgenesh2_pg.scaffold_166000022 I 0.725
estExt_gwp.C_3950051 Branchiostoma floridae estExt_gwp.C_3950051 I 0.725
PCBP4 Anolis carolinensis ENSACAG00000011701 I 0.721
PCBP4 Macaca mulatta ENSMMUG00000022205 I 0.716
A6MK33_CALJA Callithrix jacchus ENSCJAG00000005783 I 0.716
PCBP4 Gorilla gorilla ENSGGOG00000012474 I 0.716
LOC100060660 Equus caballus ENSECAG00000024218 I 0.716
Pcbp4 Mus musculus ENSMUSG00000023495 I 0.716
PCBP4 Oryctolagus cuniculus ENSOCUG00000025336 I 0.716
ENSPPYG00000013822 Pongo pygmaeus ENSPPYG00000013822 I 0.716
Pcbp4 Rattus norvegicus ENSRNOG00000012406 I 0.716
PCBP4_BOVIN Bos taurus ENSBTAG00000018622 I 0.716
PCBP4 Homo sapiens ENSG00000090097 I 0.716
PCBP4 Pan troglodytes ENSPTRG00000014983 I 0.716
PCBP4 Canis familiaris ENSCAFG00000010019 I 0.716
ENSOCUG00000021452 Oryctolagus cuniculus ENSOCUG00000021452 I 0.712
PCBP4 Cavia porcellus ENSCPOG00000014617 I 0.711
PCBP4 Taeniopygia guttata ENSTGUG00000006393 I 0.711
PCBP3 Tetraodon nigroviridis ENSTNIG00000008872 I 0.705