Cucsa.047830 (Cucumis sativus)
KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00013 (KH_1) IPR018111 Cucsa.047830 T20705_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.047830.1 KH 43 102
Cucsa.047830.1 KH 146 216
Cucsa.047830.1 KH 315 375
Cucsa.047830.1 KH 396 462
Cucsa.047830.1 KH 562 624
Cucsa.047830.2 KH 43 102
Cucsa.047830.2 KH 146 216
Cucsa.047830.2 KH 315 375
Cucsa.047830.2 KH 396 462
Cucsa.047830.2 KH 562 624
Cucsa.047830.3 KH 43 102
Cucsa.047830.3 KH 146 216
Cucsa.047830.3 KH 315 375
Cucsa.047830.3 KH 396 462
Cucsa.047830.3 KH 562 624
Cucsa.047830.4 KH 43 102
Cucsa.047830.4 KH 146 216
Cucsa.047830.4 KH 315 375
Cucsa.047830.4 KH 396 462
Cucsa.047830.4 KH 562 624
Cucsa.047830.5 KH 43 102
Cucsa.047830.5 KH 146 216
Cucsa.047830.5 KH 315 375
Cucsa.047830.5 KH 396 462
Cucsa.047830.5 KH 562 624
Cucsa.047830.6 KH 43 102
Cucsa.047830.6 KH 146 216
Cucsa.047830.6 KH 315 375
Cucsa.047830.6 KH 396 462
Cucsa.047830.6 KH 562 624

Links

Other KH family RBPs
Other Cucumis sativus RBPs

13 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Glyma05g27340.1 Glycine max Glyma05g27340.1 N 0.780
Glyma08g10330.1 Glycine max Glyma08g10330.1 N 0.789
LjT25I18.20.nc Lotus japonicus LjT25I18.20.nc N 0.755
MDP0000212912 Malus x domestica MDP0000212912 N 0.765
MDP0000384450 Malus x domestica MDP0000384450 N 0.783
MDP0000408310 Malus x domestica MDP0000408310 N 0.765
Medtr2g024360 Medicago truncatula Medtr2g024360 N 0.731
mgf002683m Mimulus guttatus mgf002683m N 0.706
PDK_20s1575061g002 Phoenix dactylifera PDK_20s1575061g002 N 0.712
PK14411.1 Cannabis sativa PK14411.1 N 0.780
B9H2A6_POPTR Populus trichocarpa POPTR_0004s06470 N 0.764
ppa002887m Prunus persica ppa002887m N 0.814