CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Cucsa.069370
(
Cucumis sativus
)
PUF
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00806 (PUF)
IPR001313
Cucsa.069370
T24709_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Cucsa.069370.1
PUF
137
171
NMKGKIPEIAGSHVSSRVLQTCVKHCTDTERDAVF
Cucsa.069370.1
PUF
173
203
ELKPHFLTLACNTYAVHLVKKMLDSASKKQL
Cucsa.069370.1
PUF
209
243
SLRGHVASLLRHMVGSLVVEHAYHFANAAQKQTLL
Cucsa.069370.2
PUF
137
171
NMKGKIPEIAGSHVSSRVLQTCVKHCTDTERDAVF
Cucsa.069370.2
PUF
173
203
ELKPHFLTLACNTYAVHLVKKMLDSASKKQL
Cucsa.069370.3
PUF
137
171
NMKGKIPEIAGSHVSSRVLQTCVKHCTDTERDAVF
Cucsa.069370.3
PUF
173
203
ELKPHFLTLACNTYAVHLVKKMLDSASKKQL
Cucsa.069370.3
PUF
209
243
SLRGHVASLLRHMVGSLVVEHAYHFANAAQKQTLL
Links
Other
PUF
family RBPs
Other
Cucumis sativus
RBPs
8 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AFLA_107810
Aspergillus flavus
CADAFLAG00004517
N
0.000
AO090023000366
Aspergillus oryzae
CADAORAG00007500
N
0.000
CC1G_07391
Coprinopsis cinerea
CC1G_07391
N
0.000
CNBG_2318
Cryptococcus neoformans
CNBG_2318
N
0.000
EDP43481.1
Malassezia globosa
EDP43481.1
N
0.000
estExt_fgenesh1_pm.C_50301
Pleurotus ostreatus
estExt_fgenesh1_pm.C_50301
N
0.000
estExt_fgenesh2_kg.C_50272
Agaricus bisporus
estExt_fgenesh2_kg.C_50272
N
0.000
estExt_fgeneshPB_pm.C_20123
Phycomyces blakesleeanus
estExt_fgeneshPB_pm.C_20123
N
0.000
estExt_Genewise1Plus.C_1610001
Postia placenta
estExt_Genewise1Plus.C_1610001
N
0.000
eu2.Lbscf0010g02950
Laccaria bicolor
eu2.Lbscf0010g02950
N
0.000
e_gw1.2.975.1
Mucor circinelloides
e_gw1.2.975.1
N
0.000
fgenesh1_pm.C_scaffold_15000005
Phanerochaete chrysosporium
fgenesh1_pm.C_scaffold_15000005
N
0.000
fgenesh1_pm.C_scaffold_9000021
Pleurotus ostreatus
fgenesh1_pm.C_scaffold_9000021
N
0.000
fgenesh2_pm.C_scaffold_3000490
Heterobasidion annosum
fgenesh2_pm.C_scaffold_3000490
N
0.000
fgeneshTM_kg.2_#_205_#_9_2_CCOI_CCON
Tremella mesenterica
fgeneshTM_kg.2_#_205_#_9_2_CCOI_CCON
N
0.000
FGSG_11064
Fusarium graminearum
FGSG_11064
N
0.000
FGSG_12376
Fusarium graminearum
FGSG_12376
N
0.000
Pc20g10130
Penicillium chrysogenum
Pc20g10130
N
0.000
UM02412
Ustilago maydis
UM02412
N
0.000