CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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FUS
(
Tarsius syrichta
)
RanBP ZF,RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00641 (zf-RanBP)
PF00076 (RRM_1)
IPR001876
IPR000504
ENSTSYG00000011757
T25677_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
FUS
M316_0.6
Homo sapiens
GGUG
SELEX
Cook et al.(2011)
637_11098054
0.937
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSTSYP00000010794
RRM
276
354
IFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKRFSGNPIK
ENSTSYP00000010794
RanBP ZF
411
439
RAGDWKCPNPTCENMNFFWRNECNQCKXX
Links
Other
RanBP ZF,RRM
family RBPs
Other
Tarsius syrichta
RBPs
61 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
cassava24038.valid.m1
Manihot esculenta
cassava24038.valid.m1
N
0.000
Cucsa.094980
Cucumis sativus
Cucsa.094980
N
0.000
Glyma11g36830.1
Glycine max
Glyma11g36830.1
N
0.000
GSVIVG00031632001
Vitis vinifera
GSVIVG00031632001
N
0.000
MDP0000127313
Malus x domestica
MDP0000127313
N
0.000
mgf012420m
Mimulus guttatus
mgf012420m
N
0.000
PK04155.1
Cannabis sativa
PK04155.1
N
0.000
B9IAB2_POPTR
Populus trichocarpa
POPTR_0014s14580
N
0.000