CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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FUS
(
Tarsius syrichta
)
RanBP ZF,RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00641 (zf-RanBP)
PF00076 (RRM_1)
IPR001876
IPR000504
ENSTSYG00000011757
T25677_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
FUS
M316_0.6
Homo sapiens
GGUG
SELEX
Cook et al.(2011)
637_11098054
0.937
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSTSYP00000010794
RRM
276
354
IFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKRFSGNPIK
ENSTSYP00000010794
RanBP ZF
411
439
RAGDWKCPNPTCENMNFFWRNECNQCKXX
Links
Other
RanBP ZF,RRM
family RBPs
Other
Tarsius syrichta
RBPs
61 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AAH44319
Xenopus laevis
AAH44319
I
0.910
AAH74437
Xenopus laevis
AAH74437
I
0.919
AAH77935
Xenopus laevis
AAH77935
I
0.712
AAH81071
Xenopus laevis
AAH81071
I
0.703
Ame_R012008
Ailuropoda melanoleuca
Ame_R012008
I
0.739
FUS
Anolis carolinensis
ENSACAG00000006776
I
0.937
FUS_BOVIN
Bos taurus
ENSBTAG00000005757
I
0.937
TAF15
Bos taurus
ENSBTAG00000006916
I
0.739
FUS
Canis familiaris
ENSCAFG00000016862
I
0.928
TAF15
Canis familiaris
ENSCAFG00000018176
I
0.739
FUS
Choloepus hoffmanni
ENSCHOG00000010780
I
0.889
ENSCJAG00000002118
Callithrix jacchus
ENSCJAG00000002118
I
0.713
ENSCJAG00000002807
Callithrix jacchus
ENSCJAG00000002807
I
0.739
LOC100395517
Callithrix jacchus
ENSCJAG00000003169
I
0.937
LOC100391580
Callithrix jacchus
ENSCJAG00000014961
I
0.739
TAF15
Cavia porcellus
ENSCPOG00000010259
I
0.721
TAF15
Danio rerio
ENSDARG00000070019
I
0.730
TAF15
Dasypus novemcinctus
ENSDNOG00000006956
I
0.721
LOC100071562
Equus caballus
ENSECAG00000000718
I
0.739
FUS
Erinaceus europaeus
ENSEEUG00000004934
I
0.937
TAF15
Echinops telfairi
ENSETEG00000001337
N
0.704
ENSETEG00000015358
Echinops telfairi
ENSETEG00000015358
I
0.838
FUS
Homo sapiens
ENSG00000089280
D
0.937
TAF15
Homo sapiens
ENSG00000172660
I
0.739
FUS
Gasterosteus aculeatus
ENSGACG00000014903
I
0.811
TAF15
Gallus gallus
ENSGALG00000002060
I
0.766
FUS
Gorilla gorilla
ENSGGOG00000003707
I
0.937
TAF15
Gorilla gorilla
ENSGGOG00000005693
I
0.739
FUS
Loxodonta africana
ENSLAFG00000001643
I
0.856
TAF15
Loxodonta africana
ENSLAFG00000018332
I
0.739
FUS
Macropus eugenii
ENSMEUG00000000968
I
0.928
TAF15
Meleagris gallopavo
ENSMGAG00000003842
I
0.766
TAF15
Myotis lucifugus
ENSMLUG00000002870
I
0.739
TAF15
Macaca mulatta
ENSMMUG00000003305
I
0.739
FUS
Macaca mulatta
ENSMMUG00000019637
I
0.937
FUS
Monodelphis domestica
ENSMODG00000001889
I
0.937
Taf15
Mus musculus
ENSMUSG00000020680
I
0.739
Fus
Mus musculus
ENSMUSG00000030795
I
0.937
FUS
Ornithorhynchus anatinus
ENSOANG00000005606
I
0.928
TAF15
Ornithorhynchus anatinus
ENSOANG00000014273
I
0.730
TAF15
Oryctolagus cuniculus
ENSOCUG00000002838
I
0.739
FUS
Oryctolagus cuniculus
ENSOCUG00000021526
I
0.937
TAF15
Oryzias latipes
ENSORLG00000011382
I
0.712
TAF15
Procavia capensis
ENSPCAG00000009582
I
0.739
ENSPPYG00000008194
Pongo pygmaeus
ENSPPYG00000008194
I
0.736
FUS
Pan troglodytes
ENSPTRG00000008038
I
0.937
TAF15
Pan troglodytes
ENSPTRG00000009026
I
0.739
FUS
Pteropus vampyrus
ENSPVAG00000003097
I
0.937
TAF15
Pteropus vampyrus
ENSPVAG00000003952
I
0.739
Taf15
Rattus norvegicus
ENSRNOG00000010604
I
0.739
Fus
Rattus norvegicus
ENSRNOG00000023360
I
0.928
ENSRNOG00000024836
Rattus norvegicus
ENSRNOG00000024836
I
0.718
D3ZSJ6_RAT
Rattus norvegicus
ENSRNOG00000028611
I
0.901
TAF15
Sorex araneus
ENSSARG00000012092
I
0.739
FUS
Sus scrofa
ENSSSCG00000007759
I
0.937
TAF15
Sus scrofa
ENSSSCG00000017707
I
0.739
TAF15
Taeniopygia guttata
ENSTGUG00000004702
I
0.766
TAF15
Tetraodon nigroviridis
ENSTNIG00000004057
I
0.703
FUS
Tetraodon nigroviridis
ENSTNIG00000011303
I
0.820
TAF15
Tursiops truncatus
ENSTTRG00000014145
I
0.739
fus
Xenopus tropicalis
ENSXETG00000001951
I
0.919