CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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GM16804
(
Drosophila sechellia
)
RanBP ZF,RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00641 (zf-RanBP)
PF00076 (RRM_1)
IPR001876
IPR000504
FBgn0171717
T25713_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
FBpp0198281
RRM
227
299
IILFGLKKHVTEADIMGELIKVDMEPTSIRVMRKQQTGASRCFAFVEFKTVEEATRWMELTQGVLQLGDHRVT
FBpp0198281
RanBP ZF
306
335
RISDWTCIKCGASNFKRRFQCYMCNASRAE
FBpp0198281
RRM
377
423
QQRLPELAKTVSKVLVSRDVLTNASRGICYLNFDTLIDSMNVFNGLT
Links
Other
RanBP ZF,RRM
family RBPs
Other
Drosophila sechellia
RBPs
5 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CG4896
Drosophila melanogaster
FBgn0031319
N
0.980
GF15173
Drosophila ananassae
FBgn0092198
N
0.722
GG24777
Drosophila erecta
FBgn0116907
N
0.887
GD23080
Drosophila simulans
FBgn0194470
N
1.000
GE17429
Drosophila yakuba
FBgn0234896
N
0.894