CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
Home
Tools
Download cart
Bulk downloads
Database stats
Contact us
Help
How to cite
GG24777
(
Drosophila erecta
)
RanBP ZF,RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00641 (zf-RanBP)
PF00076 (RRM_1)
IPR001876
IPR000504
FBgn0116907
T25700_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
FBpp0143323
RRM
230
302
IIIFGLRKHATEADIMGELIKVDLEPSSIRVMRKQPTGASRCFAFVEFKTVEEARHWMELTQGVLQLGDHRVT
FBpp0143323
RanBP ZF
309
338
RISDWTCIKCGASNFKRRFLCYMCSSSRAE
FBpp0143323
RRM
379
426
LQQSLPDLAKTVSKVLISRDALTQASRGICYLNFDTLIDSMNVFNGLT
Links
Other
RanBP ZF,RRM
family RBPs
Other
Drosophila erecta
RBPs
5 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
GE17429
Drosophila yakuba
FBgn0234896
N
0.943
CG4896
Drosophila melanogaster
FBgn0031319
N
0.894
GM16804
Drosophila sechellia
FBgn0171717
N
0.887
GD23080
Drosophila simulans
FBgn0194470
N
0.887
GF15173
Drosophila ananassae
FBgn0092198
N
0.757