CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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BRADI4G26487
(
Brachypodium distachyon
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
BRADI4G26487
T33285_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
BRADI4G26487.1
RRM
117
185
VYLGGISNDATSEDLKELCEPVGEVVEVRIMPGKRESKGYAFITFKTKDLALKAIEKLSNKTFKGKKIR
BRADI4G26487.1
RRM
195
263
LFVGNVPNSWSHDDLKKAVEEVGPGVLKIDLIKDPRTDRNRGYGFVEYYNNACAEYSRQKMSTPNFKLD
BRADI4G26487.1
RRM
288
357
VYVKNLPKNVTQGQLKKLFEHHGEITKIVLPPSKDGHDNRYGFVHFKDRHMAMKALKNTEKYELDGQLLD
BRADI4G26487.2
RRM
117
185
VYLGGISNDATSEDLKELCEPVGEVVEVRIMPGKRESKGYAFITFKTKDLALKAIEKLSNKTFKGKKIR
BRADI4G26487.2
RRM
195
263
LFVGNVPNSWSHDDLKKAVEEVGPGVLKIDLIKDPRTDRNRGYGFVEYYNNACAEYSRQKMSTPNFKLD
BRADI4G26487.2
RRM
288
357
VYVKNLPKNVTQGQLKKLFEHHGEITKIVLPPSKDGHDNRYGFVHFKDRHMAMKALKNTEKYELDGQLLD
BRADI4G26487.3
RRM
117
185
VYLGGISNDATSEDLKELCEPVGEVVEVRIMPGKRESKGYAFITFKTKDLALKAIEKLSNKTFKGKKIR
BRADI4G26487.3
RRM
195
263
LFVGNVPNSWSHDDLKKAVEEVGPGVLKIDLIKDPRTDRNRGYGFVEYYNNACAEYSRQKMSTPNFKLD
BRADI4G26487.3
RRM
288
357
VYVKNLPKNVTQGQLKKLFEHHGEITKIVLPPSKDGHDNRYGFVHFKDRHMAMKALKNTEKYELDGQLLD
Links
Other
RRM
family RBPs
Other
Brachypodium distachyon
RBPs
8 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
BGIOSIBCE033414
Oryza indica
BGIOSIBCE033414
N
0.750
BGIOSIBCE035668
Oryza indica
BGIOSIBCE035668
N
0.750
GRMZM2G075942
Zea mays
GRMZM2G075942
N
0.732
GRMZM2G101867
Zea mays
GRMZM2G101867
N
0.742
LOC_Os11g04390
Oryza sativa
LOC_Os11g04390
N
0.750
LOC_Os12g04180
Oryza sativa
LOC_Os12g04180
N
0.750
SB05G002300
Sorghum bicolor
Sb05g002300
N
0.727