CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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BGIOSIBCE035668
(
Oryza indica
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
BGIOSIBCE035668
T33098_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
BGIOSIBCE035668
RRM
113
181
VYVGGISSDVSSEDLKRLCEPVGEVVEVRMMRGKDDSRGYAFVNFRTKGLALKAVKELNNAKLKGKRIR
BGIOSIBCE035668
RRM
191
259
LFIGNVPHSWTDDDFRKVVEEVGPGVLKADLMKVSSANRNRGYGFVEYYNHACAEYARQEMSSPTFKLD
BGIOSIBCE035668
RRM
284
353
VYVKNLPKNVTQAQLKRLFEHHGEIEKVVLPPSRGGHDNRYGFVHFKDRSMAMRALQNTERYELDGQVLD
Links
Other
RRM
family RBPs
Other
Oryza indica
RBPs
7 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
LOC_Os12g04180
Oryza sativa
LOC_Os12g04180
N
1.000
BGIOSIBCE033414
Oryza indica
BGIOSIBCE033414
N
0.990
LOC_Os11g04390
Oryza sativa
LOC_Os11g04390
N
0.990
BRADI4G26487
Brachypodium distachyon
BRADI4G26487
N
0.750
GRMZM2G101867
Zea mays
GRMZM2G101867
N
0.742
SB05G002300
Sorghum bicolor
Sb05g002300
N
0.732
GRMZM2G075942
Zea mays
GRMZM2G075942
N
0.732