CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ENSCAFG00000005164
(
Canis familiaris
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSCAFG00000005164
T35021_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
HNRNPA1
M312_0.6
Homo sapiens
Sequence logo not available
UAGGGW
RIP-chip
Cook et al.(2011)
560_17925491
0.880
HNRNPA1
M271_0.6
Homo sapiens
UAGGGW
SELEX
Cook et al.(2011)
23_7510636
0.880
HNRNPA1
M022_0.6
Homo sapiens
DUAGGGW
RNAcompete
Ray et al.(2013)
RNCMPT00022
0.880
HNRNPA1L2
M023_0.6
Homo sapiens
DUAGGGW
RNAcompete
Ray et al.(2013)
RNCMPT00023
0.859
HNRNPA2B1
M024_0.6
Homo sapiens
DUAGGGW
RNAcompete
Ray et al.(2013)
RNCMPT00024
0.725
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSCAFP00000022576
RRM
16
81
LFIGGLSFETTNESLRSHFEQLGMLTDCVEMRDPNTKHSRGFGFVTYATMEEVDAATNARPHKVDR
ENSCAFP00000022576
RRM
106
177
IFADGIKEDTNTEEYHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCE
Links
Other
RRM
family RBPs
Other
Canis familiaris
RBPs
247 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ENSCING00000010611
Ciona intestinalis
ENSCING00000010611
N
0.000
fgenesh2_kg.10_#_112_#_0_0_FS3H43Z04IKC5M_CFOT
Serpula lacrymans
fgenesh2_kg.10_#_112_#_0_0_FS3H43Z04IKC5M_CFOT
N
0.000
fgenesh2_kg.12_#_635_#_11486_1_CFPN
Serpula lacrymans
fgenesh2_kg.12_#_635_#_11486_1_CFPN
N
0.000
fgenesh2_kg.12_#_754_#_11486_1_CFPN
Serpula lacrymans
fgenesh2_kg.12_#_754_#_11486_1_CFPN
N
0.000
fgenesh2_kg.14_#_548_#_11486_1_CFPN
Serpula lacrymans
fgenesh2_kg.14_#_548_#_11486_1_CFPN
N
0.000
fgenesh2_kg.15_#_627_#_0_0_FS3H43Z04IKC5M_CFOT
Serpula lacrymans
fgenesh2_kg.15_#_627_#_0_0_FS3H43Z04IKC5M_CFOT
N
0.000
fgenesh2_kg.18_#_121_#_11486_1_CFPN
Serpula lacrymans
fgenesh2_kg.18_#_121_#_11486_1_CFPN
N
0.000
fgenesh2_kg.1_#_1210_#_11486_1_CFPN
Serpula lacrymans
fgenesh2_kg.1_#_1210_#_11486_1_CFPN
N
0.000
fgenesh2_kg.20_#_21_#_11486_1_CFPN
Serpula lacrymans
fgenesh2_kg.20_#_21_#_11486_1_CFPN
N
0.000
fgenesh2_kg.2_#_2458_#_11486_1_CFPN
Serpula lacrymans
fgenesh2_kg.2_#_2458_#_11486_1_CFPN
N
0.000
fgenesh2_kg.2_#_266_#_0_0_FS3H43Z04IKC5M_CFOT
Serpula lacrymans
fgenesh2_kg.2_#_266_#_0_0_FS3H43Z04IKC5M_CFOT
N
0.000
fgenesh2_kg.3_#_1118_#_0_0_FS3H43Z04IKC5M_CFOT
Serpula lacrymans
fgenesh2_kg.3_#_1118_#_0_0_FS3H43Z04IKC5M_CFOT
N
0.000
fgenesh2_kg.4_#_2144_#_11486_1_CFPN
Serpula lacrymans
fgenesh2_kg.4_#_2144_#_11486_1_CFPN
N
0.000
fgenesh2_kg.4_#_2864_#_11486_1_CFPN
Serpula lacrymans
fgenesh2_kg.4_#_2864_#_11486_1_CFPN
N
0.000
fgenesh2_kg.5_#_1694_#_11486_1_CFPN
Serpula lacrymans
fgenesh2_kg.5_#_1694_#_11486_1_CFPN
N
0.000
fgenesh2_kg.5_#_495_#_0_0_FS3H43Z04IKC5M_CFOT
Serpula lacrymans
fgenesh2_kg.5_#_495_#_0_0_FS3H43Z04IKC5M_CFOT
N
0.000
fgenesh2_kg.6_#_1126_#_11486_1_CFPN
Serpula lacrymans
fgenesh2_kg.6_#_1126_#_11486_1_CFPN
N
0.000
fgenesh2_kg.7_#_2034_#_11486_1_CFPN
Serpula lacrymans
fgenesh2_kg.7_#_2034_#_11486_1_CFPN
N
0.000
fgenesh2_kg.7_#_456_#_0_0_FS3H43Z04IKC5M_CFOT
Serpula lacrymans
fgenesh2_kg.7_#_456_#_0_0_FS3H43Z04IKC5M_CFOT
N
0.000
fgenesh2_kg.8_#_1276_#_0_0_FS3H43Z04IKC5M_CFOT
Serpula lacrymans
fgenesh2_kg.8_#_1276_#_0_0_FS3H43Z04IKC5M_CFOT
N
0.000
fgenesh2_kg.8_#_1578_#_11486_1_CFPN
Serpula lacrymans
fgenesh2_kg.8_#_1578_#_11486_1_CFPN
N
0.000
fgenesh2_kg.9_#_513_#_11486_1_CFPN
Serpula lacrymans
fgenesh2_kg.9_#_513_#_11486_1_CFPN
N
0.000
K08D12.3
Caenorhabditis elegans
K08D12.3
N
0.000