ENSCAFG00000005164 (Canis familiaris)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCAFG00000005164 T35021_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.880
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.880
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.880
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.859
HNRNPA2B1
M024_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00024 		0.725
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCAFP00000022576 RRM 16 81
ENSCAFP00000022576 RRM 106 177

Links

Other RRM family RBPs
Other Canis familiaris RBPs

247 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSCING00000010611 Ciona intestinalis ENSCING00000010611 N 0.000
fgenesh2_kg.10_#_112_#_0_0_FS3H43Z04IKC5M_CFOT Serpula lacrymans fgenesh2_kg.10_#_112_#_0_0_FS3H43Z04IKC5M_CFOT N 0.000
fgenesh2_kg.12_#_635_#_11486_1_CFPN Serpula lacrymans fgenesh2_kg.12_#_635_#_11486_1_CFPN N 0.000
fgenesh2_kg.12_#_754_#_11486_1_CFPN Serpula lacrymans fgenesh2_kg.12_#_754_#_11486_1_CFPN N 0.000
fgenesh2_kg.14_#_548_#_11486_1_CFPN Serpula lacrymans fgenesh2_kg.14_#_548_#_11486_1_CFPN N 0.000
fgenesh2_kg.15_#_627_#_0_0_FS3H43Z04IKC5M_CFOT Serpula lacrymans fgenesh2_kg.15_#_627_#_0_0_FS3H43Z04IKC5M_CFOT N 0.000
fgenesh2_kg.18_#_121_#_11486_1_CFPN Serpula lacrymans fgenesh2_kg.18_#_121_#_11486_1_CFPN N 0.000
fgenesh2_kg.1_#_1210_#_11486_1_CFPN Serpula lacrymans fgenesh2_kg.1_#_1210_#_11486_1_CFPN N 0.000
fgenesh2_kg.20_#_21_#_11486_1_CFPN Serpula lacrymans fgenesh2_kg.20_#_21_#_11486_1_CFPN N 0.000
fgenesh2_kg.2_#_2458_#_11486_1_CFPN Serpula lacrymans fgenesh2_kg.2_#_2458_#_11486_1_CFPN N 0.000
fgenesh2_kg.2_#_266_#_0_0_FS3H43Z04IKC5M_CFOT Serpula lacrymans fgenesh2_kg.2_#_266_#_0_0_FS3H43Z04IKC5M_CFOT N 0.000
fgenesh2_kg.3_#_1118_#_0_0_FS3H43Z04IKC5M_CFOT Serpula lacrymans fgenesh2_kg.3_#_1118_#_0_0_FS3H43Z04IKC5M_CFOT N 0.000
fgenesh2_kg.4_#_2144_#_11486_1_CFPN Serpula lacrymans fgenesh2_kg.4_#_2144_#_11486_1_CFPN N 0.000
fgenesh2_kg.4_#_2864_#_11486_1_CFPN Serpula lacrymans fgenesh2_kg.4_#_2864_#_11486_1_CFPN N 0.000
fgenesh2_kg.5_#_1694_#_11486_1_CFPN Serpula lacrymans fgenesh2_kg.5_#_1694_#_11486_1_CFPN N 0.000
fgenesh2_kg.5_#_495_#_0_0_FS3H43Z04IKC5M_CFOT Serpula lacrymans fgenesh2_kg.5_#_495_#_0_0_FS3H43Z04IKC5M_CFOT N 0.000
fgenesh2_kg.6_#_1126_#_11486_1_CFPN Serpula lacrymans fgenesh2_kg.6_#_1126_#_11486_1_CFPN N 0.000
fgenesh2_kg.7_#_2034_#_11486_1_CFPN Serpula lacrymans fgenesh2_kg.7_#_2034_#_11486_1_CFPN N 0.000
fgenesh2_kg.7_#_456_#_0_0_FS3H43Z04IKC5M_CFOT Serpula lacrymans fgenesh2_kg.7_#_456_#_0_0_FS3H43Z04IKC5M_CFOT N 0.000
fgenesh2_kg.8_#_1276_#_0_0_FS3H43Z04IKC5M_CFOT Serpula lacrymans fgenesh2_kg.8_#_1276_#_0_0_FS3H43Z04IKC5M_CFOT N 0.000
fgenesh2_kg.8_#_1578_#_11486_1_CFPN Serpula lacrymans fgenesh2_kg.8_#_1578_#_11486_1_CFPN N 0.000
fgenesh2_kg.9_#_513_#_11486_1_CFPN Serpula lacrymans fgenesh2_kg.9_#_513_#_11486_1_CFPN N 0.000
K08D12.3 Caenorhabditis elegans K08D12.3 N 0.000