RBFOX3 (Cavia porcellus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCPOG00000021703 T35894_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
A2BP1
M298_0.6 		Homo sapiens UGCAUG SELEX
Cook et al.(2011)
37_16537540 		0.942
a2bp1
M297_0.6 		Danio rerio GCAUG SELEX
Cook et al.(2011)
36_12574126 		0.942
A2BP1
M159_0.6 		Homo sapiens WGCAUGM RNAcompete
Ray et al.(2013)
RNCMPT00168 		0.942
a2bp1
M118_0.6 		Drosophila melanogaster UGCAUG RNAcompete
Ray et al.(2013)
RNCMPT00123 		0.870
fox-1
M017_0.6 		Caenorhabditis elegans WGCAUGM RNAcompete
Ray et al.(2013)
RNCMPT00017 		0.739
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCPOP00000016934 RRM 115 183

Links

Other RRM family RBPs
Other Cavia porcellus RBPs

153 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAH74364 Xenopus laevis AAH74364 I 0.000
AAH89262 Xenopus laevis AAH89262 I 0.000
AAH92035 Xenopus laevis AAH92035 I 0.000
Ame_R007760 Ailuropoda melanoleuca Ame_R007760 I 0.000
Ame_R016005 Ailuropoda melanoleuca Ame_R016005 I 0.000
ENSACAG00000008965 Anolis carolinensis ENSACAG00000008965 I 0.000
SAMD4A Anolis carolinensis ENSACAG00000016355 I 0.000
A6QPG4_BOVIN Bos taurus ENSBTAG00000001468 I 0.000
SAMD4B Bos taurus ENSBTAG00000009785 I 0.000
SAMD4B Canis familiaris ENSCAFG00000005568 I 0.000
SAMD4A Canis familiaris ENSCAFG00000014940 I 0.000
SAMD4B Callithrix jacchus ENSCJAG00000014078 I 0.000
SAMD4A Callithrix jacchus ENSCJAG00000018182 I 0.000
ENSCPOG00000005932 Cavia porcellus ENSCPOG00000005932 I 0.000
SAMD4A Cavia porcellus ENSCPOG00000014637 I 0.000
SAMD4A Danio rerio ENSDARG00000075759 I 0.000
ENSDARG00000077784 Danio rerio ENSDARG00000077784 I 0.000
SAMD4A Dasypus novemcinctus ENSDNOG00000015876 I 0.000
Samd4b Dipodomys ordii ENSDORG00000013482 I 0.000
SAMD4A Equus caballus ENSECAG00000010681 I 0.000
SAMD4B Equus caballus ENSECAG00000015551 I 0.000
SAMD4A Erinaceus europaeus ENSEEUG00000005738 I 0.000
SAMD4B Echinops telfairi ENSETEG00000004346 I 0.000
SAMD4A Echinops telfairi ENSETEG00000018627 I 0.000
SAMD4A Felis catus ENSFCAG00000000005 I 0.000
SAMD4A Homo sapiens ENSG00000020577 D 0.000
SAMD4B Homo sapiens ENSG00000179134 I 0.000
ENSGACG00000010797 Gasterosteus aculeatus ENSGACG00000010797 I 0.000
SAMD4A Gallus gallus ENSGALG00000012203 I 0.000
SAMD4A Gorilla gorilla ENSGGOG00000000673 I 0.000
SAMD4B Gorilla gorilla ENSGGOG00000024088 I 0.000
SAMD4B Loxodonta africana ENSLAFG00000011957 I 0.000
SAMD4A Loxodonta africana ENSLAFG00000013245 I 0.000
SAMD4A Macropus eugenii ENSMEUG00000013419 I 0.000
SAMD4A Meleagris gallopavo ENSMGAG00000013686 I 0.000
SAMD4B Microcebus murinus ENSMICG00000006081 I 0.000
SAMD4A Microcebus murinus ENSMICG00000016212 I 0.000
SAMD4B Myotis lucifugus ENSMLUG00000002924 I 0.000
SAMD4A Myotis lucifugus ENSMLUG00000004192 I 0.000
SAMD4A Macaca mulatta ENSMMUG00000010315 I 0.000
SAMD4B Macaca mulatta ENSMMUG00000023802 I 0.000
SAMD4A Monodelphis domestica ENSMODG00000011669 I 0.000
ENSMODG00000013478 Monodelphis domestica ENSMODG00000013478 I 0.000
Samd4 Mus musculus ENSMUSG00000021838 I 0.000
Samd4b Mus musculus ENSMUSG00000037513 I 0.000
SAMD4B Oryctolagus cuniculus ENSOCUG00000000343 I 0.000
SAMD4A Oryctolagus cuniculus ENSOCUG00000003420 I 0.000
ENSOPRG00000011493 Ochotona princeps ENSOPRG00000011493 I 0.000
SAMD4A Oryzias latipes ENSORLG00000005039 I 0.000
SAMD4B Procavia capensis ENSPCAG00000010263 I 0.000
SAMD4A Procavia capensis ENSPCAG00000010880 I 0.000
ENSPPYG00000005832 Pongo pygmaeus ENSPPYG00000005832 I 0.000
ENSPPYG00000009963 Pongo pygmaeus ENSPPYG00000009963 I 0.000
SAMD4A Pan troglodytes ENSPTRG00000006364 I 0.000
SAMD4B Pan troglodytes ENSPTRG00000010961 I 0.000
SAMD4B Pteropus vampyrus ENSPVAG00000011118 I 0.000
SAMD4A Pteropus vampyrus ENSPVAG00000016060 I 0.000
SMAG1_RAT Rattus norvegicus ENSRNOG00000010489 I 0.000
Samd4b Rattus norvegicus ENSRNOG00000019831 I 0.000
SAMD4A Sorex araneus ENSSARG00000014067 I 0.000
SAMD4A Sus scrofa ENSSSCG00000005050 I 0.000
SAMD4B Sus scrofa ENSSSCG00000010706 I 0.000
SAMD4B Spermophilus tridecemlineatus ENSSTOG00000003379 I 0.000
SAMD4A Spermophilus tridecemlineatus ENSSTOG00000015276 I 0.000
SAMD4B Tupaia belangeri ENSTBEG00000003890 I 0.000
SAMD4A Tupaia belangeri ENSTBEG00000010696 I 0.000
SAMD4A Taeniopygia guttata ENSTGUG00000013086 I 0.000
ENSTGUG00000014163 Taeniopygia guttata ENSTGUG00000014163 I 0.000
ENSTNIG00000016193 Tetraodon nigroviridis ENSTNIG00000016193 I 0.000
ENSTNIG00000018801 Tetraodon nigroviridis ENSTNIG00000018801 I 0.000
ENSTRUG00000006063 Takifugu rubripes ENSTRUG00000006063 I 0.000
SAMD4A Takifugu rubripes ENSTRUG00000015288 I 0.000
SAMD4B Tarsius syrichta ENSTSYG00000003909 I 0.000
SAMD4A Tarsius syrichta ENSTSYG00000010165 I 0.000
SAMD4B Tursiops truncatus ENSTTRG00000003554 I 0.000
SAMD4A Tursiops truncatus ENSTTRG00000008280 I 0.000
SAMD4B Vicugna pacos ENSVPAG00000011788 I 0.000
samd4a Xenopus tropicalis ENSXETG00000012217 I 0.000
e_gw.8.543.1 Branchiostoma floridae e_gw.8.543.1 I 0.000
ISCW008726 Ixodes scapularis ISCW008726 I 0.000
Q5FWP2 Xenopus laevis Q5FWP2 I 0.000