e_gw.8.543.1 (Branchiostoma floridae)
SAM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00536 (SAM_1) IPR021129 e_gw.8.543.1 T61840_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
SAMD4A
M061_0.6 		Homo sapiens GCKGGHM RNAcompete
Ray et al.(2013)
RNCMPT00063 		0.787
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
e_gw.8.543.1 SAM 334 394

Links

Other SAM family RBPs
Other Branchiostoma floridae RBPs

80 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
SAMD4A Anolis carolinensis ENSACAG00000016355 I 0.902
SAMD4A Macropus eugenii ENSMEUG00000013419 I 0.885
SAMD4A Meleagris gallopavo ENSMGAG00000013686 I 0.885
SAMD4A Sorex araneus ENSSARG00000014067 I 0.885
SAMD4A Microcebus murinus ENSMICG00000016212 I 0.885
SAMD4A Loxodonta africana ENSLAFG00000013245 I 0.885
SAMD4A Sus scrofa ENSSSCG00000005050 I 0.885
SAMD4A Felis catus ENSFCAG00000000005 I 0.885
SAMD4A Spermophilus tridecemlineatus ENSSTOG00000015276 I 0.885
SAMD4A Gallus gallus ENSGALG00000012203 I 0.885
SAMD4A Gorilla gorilla ENSGGOG00000000673 I 0.885
Ame_R007760 Ailuropoda melanoleuca Ame_R007760 I 0.885
SAMD4A Myotis lucifugus ENSMLUG00000004192 I 0.885
SAMD4A Oryctolagus cuniculus ENSOCUG00000003420 I 0.885
SAMD4A Pan troglodytes ENSPTRG00000006364 I 0.885
SAMD4A Procavia capensis ENSPCAG00000010880 I 0.885
ENSPPYG00000005832 Pongo pygmaeus ENSPPYG00000005832 I 0.885
SAMD4A Pteropus vampyrus ENSPVAG00000016060 I 0.885
Samd4 Mus musculus ENSMUSG00000021838 I 0.885
SAMD4A Macaca mulatta ENSMMUG00000010315 I 0.885
SAMD4A Monodelphis domestica ENSMODG00000011669 I 0.885
SMAG1_RAT Rattus norvegicus ENSRNOG00000010489 I 0.885
SAMD4A Echinops telfairi ENSETEG00000018627 I 0.885
SAMD4A Homo sapiens ENSG00000020577 D 0.885
SAMD4A Canis familiaris ENSCAFG00000014940 I 0.885
SAMD4A Cavia porcellus ENSCPOG00000014637 I 0.885
SAMD4A Tarsius syrichta ENSTSYG00000010165 I 0.885
A6QPG4_BOVIN Bos taurus ENSBTAG00000001468 I 0.885
SAMD4A Tursiops truncatus ENSTTRG00000008280 I 0.885
SAMD4A Dasypus novemcinctus ENSDNOG00000015876 I 0.885
SAMD4A Callithrix jacchus ENSCJAG00000018182 I 0.885
SAMD4A Erinaceus europaeus ENSEEUG00000005738 I 0.885
SAMD4A Taeniopygia guttata ENSTGUG00000013086 I 0.885
SAMD4A Equus caballus ENSECAG00000010681 I 0.885
ENSTNIG00000018801 Tetraodon nigroviridis ENSTNIG00000018801 I 0.869
Q5FWP2 Xenopus laevis Q5FWP2 I 0.852
SAMD4A Takifugu rubripes ENSTRUG00000015288 I 0.852
AAH89262 Xenopus laevis AAH89262 I 0.852
SAMD4A Danio rerio ENSDARG00000075759 I 0.852
ENSTNIG00000016193 Tetraodon nigroviridis ENSTNIG00000016193 I 0.820
SAMD4A Oryzias latipes ENSORLG00000005039 I 0.820
ENSTRUG00000006063 Takifugu rubripes ENSTRUG00000006063 I 0.820
ENSACAG00000008965 Anolis carolinensis ENSACAG00000008965 I 0.803
ENSGACG00000010797 Gasterosteus aculeatus ENSGACG00000010797 I 0.803
SAMD4B Vicugna pacos ENSVPAG00000011788 I 0.787
SAMD4B Pan troglodytes ENSPTRG00000010961 I 0.787
SAMD4B Tursiops truncatus ENSTTRG00000003554 I 0.787
Samd4b Rattus norvegicus ENSRNOG00000019831 I 0.787
SAMD4B Spermophilus tridecemlineatus ENSSTOG00000003379 I 0.787
SAMD4B Sus scrofa ENSSSCG00000010706 I 0.787
SAMD4B Tupaia belangeri ENSTBEG00000003890 I 0.787
ENSTGUG00000014163 Taeniopygia guttata ENSTGUG00000014163 I 0.787
ENSPPYG00000009963 Pongo pygmaeus ENSPPYG00000009963 I 0.787
SAMD4B Pteropus vampyrus ENSPVAG00000011118 I 0.787
SAMD4B Myotis lucifugus ENSMLUG00000002924 I 0.787
SAMD4B Equus caballus ENSECAG00000015551 I 0.787
SAMD4B Procavia capensis ENSPCAG00000010263 I 0.787
SAMD4B Echinops telfairi ENSETEG00000004346 I 0.787
Samd4b Dipodomys ordii ENSDORG00000013482 I 0.787
ENSCPOG00000005932 Cavia porcellus ENSCPOG00000005932 I 0.787
SAMD4B Bos taurus ENSBTAG00000009785 I 0.787
SAMD4B Canis familiaris ENSCAFG00000005568 I 0.787
SAMD4B Callithrix jacchus ENSCJAG00000014078 I 0.787
SAMD4B Homo sapiens ENSG00000179134 I 0.787
SAMD4A Gasterosteus aculeatus ENSGACG00000017331 I 0.787
Samd4b Mus musculus ENSMUSG00000037513 I 0.787
SAMD4B Oryctolagus cuniculus ENSOCUG00000000343 I 0.787
Ame_R016005 Ailuropoda melanoleuca Ame_R016005 I 0.787
ENSMODG00000013478 Monodelphis domestica ENSMODG00000013478 I 0.787
SAMD4B Macaca mulatta ENSMMUG00000023802 I 0.787
SAMD4B Gorilla gorilla ENSGGOG00000024088 I 0.787
SAMD4B Loxodonta africana ENSLAFG00000011957 I 0.787
SAMD4B Microcebus murinus ENSMICG00000006081 I 0.787
AAH92035 Xenopus laevis AAH92035 I 0.770
AAH74364 Xenopus laevis AAH74364 I 0.770
SAMD4A Tupaia belangeri ENSTBEG00000010696 I 0.770
ENSOPRG00000011493 Ochotona princeps ENSOPRG00000011493 I 0.770
ISCW008726 Ixodes scapularis ISCW008726 I 0.738
samd4a Xenopus tropicalis ENSXETG00000012217 I 0.738
ENSDARG00000077784 Danio rerio ENSDARG00000077784 I 0.705