ENSCSAVG00000005823 (Ciona savignyi)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCSAVG00000005823 T35986_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCSAVP00000009906 RRM 47 117

Links

Other RRM family RBPs
Other Ciona savignyi RBPs

95 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
185736 Helobdella robusta 185736 N 0.000
29733.m000748 Ricinus communis 29733.m000748 N 0.000
29733.m000763 Ricinus communis 29733.m000763 N 0.000
AAEL001778 Aedes aegypti AAEL001778 N 0.000
AAH97882 Xenopus laevis AAH97882 N 0.000
AAI33788 Xenopus laevis AAI33788 N 0.000
AAR97523 Xenopus laevis AAR97523 N 0.000
AGAP007068 Anopheles gambiae AGAP007068 N 0.000
amel4_ncbi_hmm8953 Apis mellifera amel4_ncbi_hmm8953 N 0.000
Ame_R010811 Ailuropoda melanoleuca Ame_R010811 N 0.000
Aqu1.217710 Amphimedon queenslandica Aqu1.217710 N 0.000
AT1G01350 Arabidopsis thaliana AT1G01350-TAIR-G N 0.000
AT5G06420 Arabidopsis thaliana AT5G06420-TAIR-G N 0.000
BGIBMGA000186 Bombyx mori BGIBMGA000186 N 0.000
BGIOSIBCE006607 Oryza indica BGIOSIBCE006607 N 0.000
BRADI3G09570 Brachypodium distachyon BRADI3G09570 N 0.000
cgd6_3300 Cryptosporidium parvum cgd6_3300 N 0.000
chr1.CM0088.900.nc Lotus japonicus chr1.CM0088.900.nc N 0.000
Chro.60383 Cryptosporidium hominis Chro.60383 N 0.000
CMU_031370 Cryptosporidium muris CMU_031370 N 0.000
CPIJ004936 Culex quinquefasciatus CPIJ004936 N 0.000
CpipJ_CPIJ004936 Culex pipiens CpipJ_CPIJ004936 N 0.000
Cucsa.060530 Cucumis sativus Cucsa.060530 N 0.000
DGIL_AUG5s12567g4t1 Acyrtosiphon pisum DGIL_AUG5s12567g4t1 N 0.000
EDO07311.1 Babesia bovis EDO07311.1 N 0.000
EHI_192080 Entamoeba histolytica EHI_192080 N 0.000
EIN_221510 Entamoeba invadens EIN_221510 N 0.000
ENSACAG00000012485 Anolis carolinensis ENSACAG00000012485 N 0.000
R113A_BOVIN Bos taurus ENSBTAG00000006034 N 0.000
LOC518027 Bos taurus ENSBTAG00000008684 N 0.000
XM_537309.2 Canis familiaris ENSCAFG00000018373 N 0.000
XM_538154.2 Canis familiaris ENSCAFG00000018430 N 0.000
NP_001027830.1 Ciona intestinalis ENSCING00000009197 N 0.000
RNF113B Callithrix jacchus ENSCJAG00000004501 N 0.000
LOC100388689 Callithrix jacchus ENSCJAG00000022327 N 0.000
ENSCSAVG00000006210 Ciona savignyi ENSCSAVG00000006210 N 0.000
rnf113a Danio rerio ENSDARG00000037930 N 0.000
RNF113A Dasypus novemcinctus ENSDNOG00000015321 N 0.000
LOC100058519 Equus caballus ENSECAG00000003934 N 0.000
ENSECAG00000004638 Equus caballus ENSECAG00000004638 N 0.000
RNF113A Echinops telfairi ENSETEG00000018346 N 0.000
RNF113A Homo sapiens ENSG00000125352 N 0.000
RNF113B Homo sapiens ENSG00000139797 N 0.000
RNF113B Gasterosteus aculeatus ENSGACG00000009738 N 0.000
Q67ER3_CHICK Gallus gallus ENSGALG00000000538 N 0.000
RNF113A Gorilla gorilla ENSGGOG00000002324 N 0.000
RNF113B Gorilla gorilla ENSGGOG00000023052 N 0.000
RNF113A Loxodonta africana ENSLAFG00000013906 N 0.000
ENSMEUG00000001855 Macropus eugenii ENSMEUG00000001855 N 0.000
ENSMGAG00000001753 Meleagris gallopavo ENSMGAG00000001753 N 0.000
RNF113A Microcebus murinus ENSMICG00000001750 N 0.000
ENSMLUG00000010856 Myotis lucifugus ENSMLUG00000010856 N 0.000
ENSMLUG00000016812 Myotis lucifugus ENSMLUG00000016812 N 0.000
RNF113A Macaca mulatta ENSMMUG00000020223 N 0.000
RNF113B Macaca mulatta ENSMMUG00000022250 N 0.000
Rnf113a1 Mus musculus ENSMUSG00000036537 N 0.000
ENSOANG00000002592 Ornithorhynchus anatinus ENSOANG00000002592 N 0.000
RNF113A Oryctolagus cuniculus ENSOCUG00000016207 N 0.000
RNF113A Otolemur garnettii ENSOGAG00000016171 N 0.000
Q67EQ7_ORYLA Oryzias latipes ENSORLG00000002442 N 0.000
RNF113A Procavia capensis ENSPCAG00000014633 N 0.000
ENSPPYG00000005460 Pongo pygmaeus ENSPPYG00000005460 N 0.000
ENSPPYG00000020676 Pongo pygmaeus ENSPPYG00000020676 N 0.000
RNF113B Pan troglodytes ENSPTRG00000005987 N 0.000
RNF113A Pan troglodytes ENSPTRG00000022231 N 0.000
Rnf113a1 Rattus norvegicus ENSRNOG00000034040 N 0.000
ENSSARG00000010436 Sorex araneus ENSSARG00000010436 N 0.000
ENSSSCG00000012610 Sus scrofa ENSSSCG00000012610 N 0.000
ENSSSCG00000012616 Sus scrofa ENSSSCG00000012616 N 0.000
RNF113A Tupaia belangeri ENSTBEG00000012687 N 0.000
RNF113A Taeniopygia guttata ENSTGUG00000001947 N 0.000
RNF113B Tetraodon nigroviridis ENSTNIG00000014938 N 0.000
RNF113B Takifugu rubripes ENSTRUG00000011142 N 0.000
RNF113A Vicugna pacos ENSVPAG00000004521 N 0.000
rnf113a Xenopus tropicalis ENSXETG00000002042 N 0.000
estExt_fgenesh1_pg.C_5430007 Capitella teleta estExt_fgenesh1_pg.C_5430007 N 0.000
estExt_fgenesh1_pm.C_10087 Coccomyxa C 169 estExt_fgenesh1_pm.C_10087 N 0.000
estExt_fgenesh1_pm.C_170027 Phytophthora capsici estExt_fgenesh1_pm.C_170027 N 0.000
estExt_fgenesh2_kg.C_62064 Serpula lacrymans estExt_fgenesh2_kg.C_62064 N 0.000
estExt_fgenesh2_pg.C_50080 Agaricus bisporus estExt_fgenesh2_pg.C_50080 N 0.000
estExt_fgeneshCV_pg.C_10417 Chlorella vulgaris estExt_fgeneshCV_pg.C_10417 N 0.000
estExt_Genewise1.C_120284 Chlorella NC64A estExt_Genewise1.C_120284 N 0.000
estExt_Genewise1.C_sca_120492 Lottia gigantea estExt_Genewise1.C_sca_120492 N 0.000
estExt_Genewise1Plus.C_80076 Volvox carteri estExt_Genewise1Plus.C_80076 N 0.000
estExt_GenewiseH_1.C_3140043 Nematostella vectensis estExt_GenewiseH_1.C_3140043 N 0.000
estExt_GeneWisePlus_human.C_50103 Laccaria bicolor estExt_GeneWisePlus_human.C_50103 N 0.000
estExt_gwp_1W.C_30096 Chlamydomonas reinhardtii estExt_gwp_1W.C_30096 N 0.000
estExt_gwp_gw1.C_1140075 Physcomitrella patens estExt_gwp_gw1.C_1140075 N 0.000
e_gw1.2.1336.1 Trichoplax adhaerens e_gw1.2.1336.1 N 0.000
e_gw1.5.501.1 Pleurotus ostreatus e_gw1.5.501.1 N 0.000
CG4973 Drosophila melanogaster FBgn0038772 N 0.000
GA18564-RA Drosophila pseudoobscura FBgn0064425 N 0.000
GK22373 Drosophila willistoni FBgn0067112 N 0.000
GF17636 Drosophila ananassae FBgn0094654 N 0.000
GG23724 Drosophila erecta FBgn0115865 N 0.000
GH22886 Drosophila grimshawi FBgn0130343 N 0.000
GI22714 Drosophila mojavensis FBgn0145441 N 0.000
GL12088 Drosophila persimilis FBgn0149696 N 0.000
GM17684 Drosophila sechellia FBgn0172592 N 0.000
GD19337 Drosophila simulans FBgn0190839 N 0.000
GJ23438 Drosophila virilis FBgn0210538 N 0.000
GE25648 Drosophila yakuba FBgn0242710 N 0.000
fgenesh1_pg.C_scaffold_13000094 Phytophthora ramorum fgenesh1_pg.C_scaffold_13000094 N 0.000
fgenesh2_pg.C_scaffold_6000249 Selaginella moellendorfii fgenesh2_pg.C_scaffold_6000249 N 0.000
fgenesh2_pg.scaffold_2135000001 Branchiostoma floridae fgenesh2_pg.scaffold_2135000001 N 0.000
fgenesh2_pm.scaffold_144000004 Branchiostoma floridae fgenesh2_pm.scaffold_144000004 N 0.000
fgeneshNG_pg.scaffold_2000259 Naegleria gruberi fgeneshNG_pg.scaffold_2000259 N 0.000
Glyma03g02920.1 Glycine max Glyma03g02920.1 N 0.000
Glyma05g37520.1 Glycine max Glyma05g37520.1 N 0.000
gm1.100391 Emiliania huxleyi gm1.100391 N 0.000
GRMZM2G373653 Zea mays GRMZM2G373653 N 0.000
GSVIVG00027082001 Vitis vinifera GSVIVG00027082001 N 0.000
gw1.1.878.1 Batrachochytrium dendrobatidis gw1.1.878.1 N 0.000
gw1.2.524.1 Monosiga brevicollis gw1.2.524.1 N 0.000
gw1.20.96.1 Phycomyces blakesleeanus gw1.20.96.1 N 0.000
gw1.63.49.1 Postia placenta gw1.63.49.1 N 0.000
gw1.9.174.1 Postia placenta gw1.9.174.1 N 0.000
gw1.9.306.1 Micromonas pusilla gw1.9.306.1 N 0.000
gww2.6.423.1 Phanerochaete chrysosporium gww2.6.423.1 N 0.000
ISCW023200 Ixodes scapularis ISCW023200 N 0.000
KLLA0C18260g Kluyveromyces lactis KLLA0C18260g N 0.000
KLTH0E08580g Kluyveromyces thermotolerans KLTH0E08580g N 0.000
LjSGA_011721.2 Lotus japonicus LjSGA_011721.2 N 0.000
LOC_Os02g19804 Oryza sativa LOC_Os02g19804 N 0.000
MDP0000182690 Malus x domestica MDP0000182690 N 0.000
MDP0000202598 Malus x domestica MDP0000202598 N 0.000
MDP0000274000 Malus x domestica MDP0000274000 N 0.000
Medtr7g132570 Medicago truncatula Medtr7g132570 N 0.000
Medtr7g132670 Medicago truncatula Medtr7g132670 N 0.000
Medtr8g068390 Medicago truncatula Medtr8g068390 N 0.000
mgf009866m Mimulus guttatus mgf009866m N 0.000
nasonia_NCBI_hmm132664 Nasonia vitripennis nasonia_NCBI_hmm132664 N 0.000
NCLIV_046420 Neospora caninum NCLIV_046420 N 0.000
PHUM169980 Pediculus humanus PHUM169980 N 0.000
PITG_04905 Phytophthora infestans PITG_04905 N 0.000
PK05761.1 Cannabis sativa PK05761.1 N 0.000
ppa009728m Prunus persica ppa009728m N 0.000
PTSG_02658 Salpingoeca rosetta PTSG_02658 N 0.000
SB04G009270 Sorghum bicolor Sb04g009270 N 0.000
XM_002892025.1 Arabidopsis lyrata scaffold_100114.1 N 0.000
SJAG_03112 Schizosaccharomyces japonicus SJAG_03112 N 0.000
SPPG_00604 Spizellomyces punctatus SPPG_00604 N 0.000
s_444298 Phytophthora sojae s_444298 N 0.000
TA05795 Theileria annulata TA05795 N 0.000
TGGT1_081710 Toxoplasma gondii TGGT1_081710 N 0.000
TGME49_026560 Toxoplasma gondii TGME49_026560 N 0.000
TGVEG_067620 Toxoplasma gondii TGVEG_067620 N 0.000
TP01_0812 Theileria parva TP01_0812 N 0.000
UM05163 Ustilago maydis UM05163 N 0.000
XP_001196290.1 Strongylocentrotus purpuratus XP_001196290.1 N 0.000
XP_002169878.1 Hydra magnipapillata XP_002169878.1 N 0.000
XP_783481.2 Strongylocentrotus purpuratus XP_783481.2 N 0.000