fgenesh2_pg.scaffold_2135000001 (Branchiostoma floridae)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 fgenesh2_pg.scaffold_2135000001 T05308_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_pg.scaffold_2135000001 CCCH ZF 105 131

Links

Other CCCH ZF family RBPs
Other Branchiostoma floridae RBPs

237 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
fgenesh2_pm.scaffold_144000004 Branchiostoma floridae fgenesh2_pm.scaffold_144000004 N 1.000
XP_001196290.1 Strongylocentrotus purpuratus XP_001196290.1 N 0.926
XM_537309.2 Canis familiaris ENSCAFG00000018373 N 0.926
XP_783481.2 Strongylocentrotus purpuratus XP_783481.2 N 0.926
PASA_GEN_19100012 Daphnia pulex PASA_GEN_19100012 N 0.926
amel4_ncbi_hmm8953 Apis mellifera amel4_ncbi_hmm8953 N 0.889
PHUM169980 Pediculus humanus PHUM169980 N 0.889
DGIL_AUG5s12567g4t1 Acyrtosiphon pisum DGIL_AUG5s12567g4t1 N 0.889
RNF113B Pan troglodytes ENSPTRG00000005987 N 0.889
RNF113A Pan troglodytes ENSPTRG00000022231 N 0.889
ENSSARG00000010436 Sorex araneus ENSSARG00000010436 N 0.889
Rnf113a1 Rattus norvegicus ENSRNOG00000034040 N 0.889
nasonia_NCBI_hmm132664 Nasonia vitripennis nasonia_NCBI_hmm132664 N 0.889
ENSPPYG00000020676 Pongo pygmaeus ENSPPYG00000020676 N 0.889
RNF113A Otolemur garnettii ENSOGAG00000016171 N 0.889
RNF113A Oryctolagus cuniculus ENSOCUG00000016207 N 0.889
RNF113A Procavia capensis ENSPCAG00000014633 N 0.889
rnf113a Xenopus tropicalis ENSXETG00000002042 N 0.889
RNF113A Vicugna pacos ENSVPAG00000004521 N 0.889
ENSPPYG00000005460 Pongo pygmaeus ENSPPYG00000005460 N 0.889
ENSSSCG00000012610 Sus scrofa ENSSSCG00000012610 N 0.889
ENSSSCG00000012616 Sus scrofa ENSSSCG00000012616 N 0.889
RNF113A Taeniopygia guttata ENSTGUG00000001947 N 0.889
ISCW023200 Ixodes scapularis ISCW023200 N 0.889
AAH97882 Xenopus laevis AAH97882 N 0.889
AAI33788 Xenopus laevis AAI33788 N 0.889
RNF113B Tetraodon nigroviridis ENSTNIG00000014938 N 0.889
AAR97523 Xenopus laevis AAR97523 N 0.889
RNF113B Takifugu rubripes ENSTRUG00000011142 N 0.889
XP_002169878.1 Hydra magnipapillata XP_002169878.1 N 0.889
ENSOANG00000002592 Ornithorhynchus anatinus ENSOANG00000002592 N 0.889
SPRG_14175 Saprolegnia parasitica SPRG_14175 N 0.889
SPRG_10807 Saprolegnia parasitica SPRG_10807 N 0.889
SPPG_00604 Spizellomyces punctatus SPPG_00604 N 0.889
RNF113B Macaca mulatta ENSMMUG00000022250 N 0.889
RNF113A Tupaia belangeri ENSTBEG00000012687 N 0.889
GJ23438 Drosophila virilis FBgn0210538 N 0.889
Q67EQ7_ORYLA Oryzias latipes ENSORLG00000002442 N 0.889
RNF113B Homo sapiens ENSG00000139797 N 0.889
estExt_Genewise1.C_sca_120492 Lottia gigantea estExt_Genewise1.C_sca_120492 N 0.889
RNF113B Gasterosteus aculeatus ENSGACG00000009738 N 0.889
RNF113A Homo sapiens ENSG00000125352 N 0.889
RNF113A Echinops telfairi ENSETEG00000018346 N 0.889
estExt_fgenesh1_pg.C_5430007 Capitella teleta estExt_fgenesh1_pg.C_5430007 N 0.889
LOC100058519 Equus caballus ENSECAG00000003934 N 0.889
ENSECAG00000004638 Equus caballus ENSECAG00000004638 N 0.889
estExt_GenewiseH_1.C_3140043 Nematostella vectensis estExt_GenewiseH_1.C_3140043 N 0.889
Q67ER3_CHICK Gallus gallus ENSGALG00000000538 N 0.889
RNF113A Microcebus murinus ENSMICG00000001750 N 0.889
ENSMLUG00000010856 Myotis lucifugus ENSMLUG00000010856 N 0.889
RNF113A Macaca mulatta ENSMMUG00000020223 N 0.889
ENSMGAG00000001753 Meleagris gallopavo ENSMGAG00000001753 N 0.889
ENSMEUG00000001855 Macropus eugenii ENSMEUG00000001855 N 0.889
RNF113A Gorilla gorilla ENSGGOG00000002324 N 0.889
RNF113B Gorilla gorilla ENSGGOG00000023052 N 0.889
RNF113A Loxodonta africana ENSLAFG00000013906 N 0.889
rnf113a Danio rerio ENSDARG00000037930 N 0.889
RNF113A Dasypus novemcinctus ENSDNOG00000015321 N 0.889
ENSCSAVG00000006210 Ciona savignyi ENSCSAVG00000006210 N 0.889
Rnf113a1 Mus musculus ENSMUSG00000036537 N 0.889
XM_538154.2 Canis familiaris ENSCAFG00000018430 N 0.889
LOC518027 Bos taurus ENSBTAG00000008684 N 0.889
R113A_BOVIN Bos taurus ENSBTAG00000006034 N 0.889
Ame_R010811 Ailuropoda melanoleuca Ame_R010811 N 0.889
ENSACAG00000012485 Anolis carolinensis ENSACAG00000012485 N 0.889
RNF113A Choloepus hoffmanni ENSCHOG00000008711 N 0.889
Medtr8g068390 Medicago truncatula Medtr8g068390 N 0.889
LOC100388689 Callithrix jacchus ENSCJAG00000022327 N 0.889
BGIBMGA000186 Bombyx mori BGIBMGA000186 N 0.889
RNF113B Callithrix jacchus ENSCJAG00000004501 N 0.889
NP_001027830.1 Ciona intestinalis ENSCING00000009197 N 0.889
ENSMLUG00000016812 Myotis lucifugus ENSMLUG00000016812 N 0.852
CG4973 Drosophila melanogaster FBgn0038772 N 0.852
GK22373 Drosophila willistoni FBgn0067112 N 0.852
PITG_04905 Phytophthora infestans PITG_04905 N 0.852
GA18564-RA Drosophila pseudoobscura FBgn0064425 N 0.852
BRADI3G09570 Brachypodium distachyon BRADI3G09570 N 0.852
PK05761.1 Cannabis sativa PK05761.1 N 0.852
CPIJ004936 Culex quinquefasciatus CPIJ004936 N 0.852
AAEL001778 Aedes aegypti AAEL001778 N 0.852
AGAP007068 Anopheles gambiae AGAP007068 N 0.852
BGIOSIBCE006607 Oryza indica BGIOSIBCE006607 N 0.852
GF17636 Drosophila ananassae FBgn0094654 N 0.852
GM17684 Drosophila sechellia FBgn0172592 N 0.852
estExt_Genewise1Plus.C_21344 Tremella mesenterica estExt_Genewise1Plus.C_21344 N 0.852
GRMZM2G373653 Zea mays GRMZM2G373653 N 0.852
e_gw1.8.388.1 Schizophyllum commune e_gw1.8.388.1 N 0.852
s_444298 Phytophthora sojae s_444298 N 0.852
mgf009866m Mimulus guttatus mgf009866m N 0.852
MDP0000202598 Malus x domestica MDP0000202598 N 0.852
29733.m000763 Ricinus communis 29733.m000763 N 0.852
SB04G009270 Sorghum bicolor Sb04g009270 N 0.852
estExt_fgenesh2_pg.C_30366 Heterobasidion annosum estExt_fgenesh2_pg.C_30366 N 0.852
GG23724 Drosophila erecta FBgn0115865 N 0.852
chr1.CM0088.900.nc Lotus japonicus chr1.CM0088.900.nc N 0.852
185736 Helobdella robusta 185736 N 0.852
29733.m000748 Ricinus communis 29733.m000748 N 0.852
4131 Aureococcus anophagefferens 4131 N 0.852
EDO07311.1 Babesia bovis EDO07311.1 N 0.852
estExt_fgenesh1_pm.C_170027 Phytophthora capsici estExt_fgenesh1_pm.C_170027 N 0.852
Medtr7g132570 Medicago truncatula Medtr7g132570 N 0.852
Medtr7g132670 Medicago truncatula Medtr7g132670 N 0.852
MDP0000274000 Malus x domestica MDP0000274000 N 0.852
MDP0000182690 Malus x domestica MDP0000182690 N 0.852
fgenesh1_pg.C_scaffold_13000094 Phytophthora ramorum fgenesh1_pg.C_scaffold_13000094 N 0.852
GD19337 Drosophila simulans FBgn0190839 N 0.852
GE25648 Drosophila yakuba FBgn0242710 N 0.852
GSVIVG00027082001 Vitis vinifera GSVIVG00027082001 N 0.852
GL12088 Drosophila persimilis FBgn0149696 N 0.852
CAOG_06860 Capsaspora owczarzaki CAOG_06860 N 0.852
GH22886 Drosophila grimshawi FBgn0130343 N 0.852
CpipJ_CPIJ004936 Culex pipiens CpipJ_CPIJ004936 N 0.852
GI22714 Drosophila mojavensis FBgn0145441 N 0.852
CC1G_03236 Coprinopsis cinerea CC1G_03236 N 0.852
Glyma05g37520.1 Glycine max Glyma05g37520.1 N 0.852
Glyma03g02920.1 Glycine max Glyma03g02920.1 N 0.852
LOC_Os02g19804 Oryza sativa LOC_Os02g19804 N 0.852
estExt_gwp_gw1.C_1140075 Physcomitrella patens estExt_gwp_gw1.C_1140075 N 0.852
ppa009728m Prunus persica ppa009728m N 0.852
Smp_033590 Schistosoma mansoni Smp_033590 N 0.852
estExt_Genewise1.C_340021 Melampsora laricis populina estExt_Genewise1.C_340021 N 0.815
gw1.2.524.1 Monosiga brevicollis gw1.2.524.1 N 0.815
estExt_GeneWisePlus_human.C_50103 Laccaria bicolor estExt_GeneWisePlus_human.C_50103 N 0.815
gw1.1.878.1 Batrachochytrium dendrobatidis gw1.1.878.1 N 0.815
Cucsa.060530 Cucumis sativus Cucsa.060530 N 0.815
gww2.6.423.1 Phanerochaete chrysosporium gww2.6.423.1 N 0.815
estExt_Genewise1.C_120284 Chlorella NC64A estExt_Genewise1.C_120284 N 0.815
gw1.20.96.1 Phycomyces blakesleeanus gw1.20.96.1 N 0.815
Aqu1.217710 Amphimedon queenslandica Aqu1.217710 N 0.815
estExt_fgenesh2_kg.C_62064 Serpula lacrymans estExt_fgenesh2_kg.C_62064 N 0.815
LjSGA_011721.2 Lotus japonicus LjSGA_011721.2 N 0.815
Ppa-tag-331 Pristionchus pacificus PPA25510 N 0.815
CMU_031370 Cryptosporidium muris CMU_031370 N 0.815
UM05163 Ustilago maydis UM05163 N 0.815
Minc18333 Meloidogyne incognita Minc18333 N 0.815
PTSG_02658 Salpingoeca rosetta PTSG_02658 N 0.815
TP01_0812 Theileria parva TP01_0812 N 0.815
TA05795 Theileria annulata TA05795 N 0.815
AT1G01350 Arabidopsis thaliana AT1G01350-TAIR-G N 0.815
XM_002892025.1 Arabidopsis lyrata scaffold_100114.1 N 0.815
cgd6_3300 Cryptosporidium parvum cgd6_3300 N 0.815
e_gw1.5.501.1 Pleurotus ostreatus e_gw1.5.501.1 N 0.815
Chro.60383 Cryptosporidium hominis Chro.60383 N 0.815
estExt_fgenesh2_pg.C_50080 Agaricus bisporus estExt_fgenesh2_pg.C_50080 N 0.815
estExt_fgenesh1_pm.C_10087 Coccomyxa C 169 estExt_fgenesh1_pm.C_10087 N 0.815
estExt_fgeneshCV_pg.C_10417 Chlorella vulgaris estExt_fgeneshCV_pg.C_10417 N 0.815
AT5G06420 Arabidopsis thaliana AT5G06420-TAIR-G N 0.815
fgenesh2_pg.C_scaffold_6000249 Selaginella moellendorfii fgenesh2_pg.C_scaffold_6000249 N 0.778
e_gw1.2.1336.1 Trichoplax adhaerens e_gw1.2.1336.1 N 0.778
rnf-113 Caenorhabditis elegans K01G5.1 N 0.778
THAPSDRAFT_25179 Thalassiosira pseudonana Thaps25179 N 0.778
PHATRDRAFT_12516 Phaeodactylum tricornutum Phatr12516 N 0.778
estExt_gwp_1W.C_30096 Chlamydomonas reinhardtii estExt_gwp_1W.C_30096 N 0.778
estExt_Genewise1Plus.C_80076 Volvox carteri estExt_Genewise1Plus.C_80076 N 0.778
An02g05190 Aspergillus niger CADANGAG00002035 N 0.778
LOAG_01140 Loa loa LOAG_01140 N 0.778
PredSwiss_CON4272.1 Pneumocystis carinii PredSwiss_CON4272.1 N 0.778
gw1.9.306.1 Micromonas pusilla gw1.9.306.1 N 0.778
16613_YLR323C Saccharomyces bayanus 16613_YLR323C N 0.778
A7TKV6_VANPO Vanderwaltozyma polyspora A7TKV6_VANPO N 0.778
YALI0C22484g Yarrowia lipolytica YALI0C22484g N 0.778
e_gw1.00866.533.1 Aspergillus carbonarius e_gw1.00866.533.1 N 0.778
Bm1_06930 Brugia malayi Bm1_06930 N 0.778
gw1.9.174.1 Postia placenta gw1.9.174.1 N 0.778
SJAG_03112 Schizosaccharomyces japonicus SJAG_03112 N 0.778
CBG18314 Caenorhabditis briggsae CBG18314 N 0.778
CJA02847 Caenorhabditis japonica CJA02847 N 0.778
Glyma08g39400.1 Glycine max Glyma08g39400.1 N 0.778
CBN12332 Caenorhabditis brenneri CBN12332 N 0.778
CRE04837 Caenorhabditis remanei CRE04837 N 0.778
WUBG_06682 Wuchereria bancrofti WUBG_06682 N 0.778
gw1.63.49.1 Postia placenta gw1.63.49.1 N 0.778
EIN_221510 Entamoeba invadens EIN_221510 N 0.741
CAGL0A00935g Candida glabrata CAGL0A00935g N 0.741
estExt_fgenesh1_pm.C_110126 Cryphonectria parasitica estExt_fgenesh1_pm.C_110126 N 0.741
KLTH0E08580g Kluyveromyces thermotolerans KLTH0E08580g N 0.741
GSTUMT00004845001 Tuber melanosporum GSTUMT00004845001 N 0.741
fgenesh1_pg.C_Chr_12.0001000110 Ostreococcus tauri fgenesh1_pg.C_Chr_12.0001000110 N 0.741
CWC24 Ashbya gossypii CWC24 N 0.741
fgeneshNG_pg.scaffold_2000259 Naegleria gruberi fgeneshNG_pg.scaffold_2000259 N 0.741
EFA78387.1 Polysphondylium pallidum EFA78387.1 N 0.741
estExt_fgenesh1_pm.C_chr_30248 Mycosphaerella graminicola estExt_fgenesh1_pm.C_chr_30248 N 0.741
estExt_Genewise1.C_10555 Cochliobolus heterostrophus C5 estExt_Genewise1.C_10555 N 0.741
gwEuk.12.222.1 Ostreococcus lucimarinus gwEuk.12.222.1 N 0.741
e_gw1.32.54.1 Fragilariopsis cylindrus e_gw1.32.54.1 N 0.741
Kwal_17638 Kluyveromyces waltii Kwal_17638 N 0.741
15643_YLR323C Saccharomyces paradoxus 15643_YLR323C N 0.741
15153_YLR323C Saccharomyces mikatae 15153_YLR323C N 0.741
e_gw1.12.147.1 Ostreococcus RCC809 e_gw1.12.147.1 N 0.741
e_gw1.1.717.1 Myceliophthora thermophila e_gw1.1.717.1 N 0.741
fgeneshDP_pg.C_scaffold_172000011 Dictyostelium purpureum fgeneshDP_pg.C_scaffold_172000011 N 0.741
KLLA0C18260g Kluyveromyces lactis KLLA0C18260g N 0.741
TEQG_05573 Trichophyton equinum TEQG_05573 N 0.741
TERG_03941 Trichophyton rubrum TERG_03941 N 0.741
TESG_00049 Trichophyton tonsurans TESG_00049 N 0.741
TRV_01821 Trichophyton verrucosum TRV_01821 N 0.741
SPOG_02814 Schizosaccharomyces cryophilus SPOG_02814 N 0.741
SOCG_00229 Schizosaccharomyces octosporus SOCG_00229 N 0.741
MGYG_03604 Microsporum gypseum MGYG_03604 N 0.741
PABG_00271 Paracoccidioides brasiliensis PABG_00271 N 0.741
PTRG_10816 Pyrenophora tritici repentis PTRG_10816 N 0.741
ARB_03970 Arthroderma benhamiae ARB_03970 N 0.741
VDAG_02435 Verticillium dahliae VDAG_02435 N 0.741
AFUA_5G07720 Aspergillus fumigatus CADAFUAG00006406 N 0.741
ACLA_012790 Aspergillus clavatus CADACLAG00001301 N 0.741
SAKL0H22880g Lachancea kluyveri SAKL0H22880g N 0.741
ANIA_07755 Aspergillus nidulans CADANIAG00000892 N 0.741
AMAG_06522 Allomyces macrogynus AMAG_06522 N 0.741
AMAG_15438 Allomyces macrogynus AMAG_15438 N 0.741
SNOG_16397 Stagonospora nodorum SNOG_16397 N 0.704
gm1.100391 Emiliania huxleyi gm1.100391 N 0.704
gw1.27.284.1 Neurospora tetrasperma gw1.27.284.1 N 0.704
gw1.1.1618.1 Thielavia terrestris gw1.1.1618.1 N 0.704
estExt_fgenesh2_pg.C_20402 Neurospora discreta estExt_fgenesh2_pg.C_20402 N 0.704
Skud_Contig756.2 Saccharomyces kudriavzevii Skud_Contig756.2 N 0.704
EAT76222.1 Phaeosphaeria nodorum EAT76222.1 N 0.704
FGSG_08901 Fusarium graminearum FGSG_08901 N 0.704
CWC24 Saccharomyces cerevisiae YLR323C N 0.704
EDI_078670 Entamoeba dispar EDI_078670 N 0.704
EHI_192080 Entamoeba histolytica EHI_192080 N 0.704
BDBG_04068 Blastomyces dermatitidis BDBG_04068 N 0.704
ZYRO0G10956g Zygosaccharomyces rouxii ZYRO0G10956g N 0.704
cwf24 Schizosaccharomyces pombe SPBC13E7.02 N 0.704
NCU01954 Neurospora crassa NCU01954 N 0.704
PMAA_037770 Penicillium marneffei PMAA_037770 N 0.704
rnf113 Dictyostelium discoideum DDB_G0267870 N 0.704
NCLIV_046420 Neospora caninum NCLIV_046420 N 0.704
PKH_126250 Plasmodium knowlesi PKH_126250 N 0.704
CPSG_00950 Coccidioides posadasii CPSG_00950 N 0.704
Pa_1_20620 Podospora anserina Pa_1_20620 N 0.704
HCAG_02941 Histoplasma capsulatum HCAG_02941 N 0.704
CIMG_06140 Coccidioides immitis CIMG_06140 N 0.704
TGVEG_067620 Toxoplasma gondii TGVEG_067620 N 0.704
PVX_118300 Plasmodium vivax PVX_118300 N 0.704
TGGT1_081710 Toxoplasma gondii TGGT1_081710 N 0.704
TGME49_026560 Toxoplasma gondii TGME49_026560 N 0.704
MCYG_07006 Microsporum canis MCYG_07006 N 0.704