CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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RBM45
(
Echinops telfairi
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSETEG00000013424
T36975_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSETEP00000010886
RRM
31
95
VISKYTPESVLRERFSPFGEIQDIWVVRDKHTKESKGIAFVKFARSSQACRAMEEMHGQCLSPND
ENSETEP00000010886
RRM
113
186
RDVEDEELTRIFVMIPKSYSEEDLREKFKVYGDIEYCSIIKNKVTGESKGLGYVRYLKPSQAAQAIENCDRSFK
ENSETEP00000010886
RRM
398
458
FNPHPLPLDVLEDIFCRFGNLIEVYLVSGKNVGYAKYADRVSANDAITTLHGKILNGVRLK
Links
Other
RRM
family RBPs
Other
Echinops telfairi
RBPs
4 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
e_gw1.2.858.1
Trichoderma reesei
e_gw1.2.858.1
N
0.000
fgenesh1_pg.C_scaffold_2000270
Trichoderma atroviride
fgenesh1_pg.C_scaffold_2000270
N
0.000
FOXG_08275
Fusarium oxysporum
FOXG_08275
N
0.000
GLRG_05733
Colletotrichum graminicola
GLRG_05733
N
0.000
gw1.1.1031.1
Trichoderma virens
gw1.1.1031.1
N
0.000
VDBG_08298
Verticillium albo atrum
VDBG_08298
N
0.000