CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
Home
Tools
Download cart
Bulk downloads
Database stats
Contact us
Help
How to cite
ENSMODG00000024570
(
Monodelphis domestica
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSMODG00000024570
T39222_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
HNRNPA1
M312_0.6
Homo sapiens
Sequence logo not available
UAGGGW
RIP-chip
Cook et al.(2011)
560_17925491
0.759
HNRNPA1
M271_0.6
Homo sapiens
UAGGGW
SELEX
Cook et al.(2011)
23_7510636
0.759
HNRNPA1
M022_0.6
Homo sapiens
DUAGGGW
RNAcompete
Ray et al.(2013)
RNCMPT00022
0.759
HNRNPA1L2
M023_0.6
Homo sapiens
DUAGGGW
RNAcompete
Ray et al.(2013)
RNCMPT00023
0.745
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSMODP00000034649
RRM
22
90
LFIGSLSFETMDDSLREHFKWGTLSDFAVMRDPQTKHSRGFGFVTYSCVEEVDAAMCAQPHKVDGHVVE
ENSMODP00000034649
RRM
112
180
IFVGGIKEDAEEYNLRDYFEKYGKIKTIEVMEDQQSGKKRGFAFVTFDDHDTVDKIFVKYHTINGHNCE
Links
Other
RRM
family RBPs
Other
Monodelphis domestica
RBPs
67 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
LjSGA_065336.1
Lotus japonicus
LjSGA_065336.1
N
0.000
PDK_20s1300711g001
Phoenix dactylifera
PDK_20s1300711g001
N
0.000
PDK_20s130094197g001
Phoenix dactylifera
PDK_20s130094197g001
N
0.000
PDK_20s1328531g001
Phoenix dactylifera
PDK_20s1328531g001
N
0.000
PK26404.1
Cannabis sativa
PK26404.1
N
0.000