PDK_20s130094197g001 (Phoenix dactylifera)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 PDK_20s130094197g001 T58025_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
PDK_20s130094197g001 RRM 55 111

Links

Other RRM family RBPs
Other Phoenix dactylifera RBPs

26 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PDK_20s1328531g001 Phoenix dactylifera PDK_20s1328531g001 N 0.912
PDK_20s1300711g001 Phoenix dactylifera PDK_20s1300711g001 N 0.877
LjSGA_065336.1 Lotus japonicus LjSGA_065336.1 N 0.860
PK26404.1 Cannabis sativa PK26404.1 N 0.842
MDP0000320467 Malus x domestica MDP0000320467 N 0.778
chr3.LjT39G24.170.nd Lotus japonicus chr3.LjT39G24.170.nd N 0.763
cassava37746.valid.m1 Manihot esculenta cassava37746.valid.m1 N 0.757
cassava37747.valid.m1 Manihot esculenta cassava37747.valid.m1 N 0.757
29876.m000260 Ricinus communis 29876.m000260 N 0.757
PDK_20s1812851g001 Phoenix dactylifera PDK_20s1812851g001 N 0.746
GSVIVG00025009001 Vitis vinifera GSVIVG00025009001 N 0.743
B9HPJ8_POPTR Populus trichocarpa POPTR_0009s03370 N 0.737
B9HMF0_POPTR Populus trichocarpa POPTR_0008s05270 N 0.737
AT5G02530 Arabidopsis thaliana AT5G02530-TAIR-G N 0.729
mgf010207m Mimulus guttatus mgf010207m N 0.729
XM_002873013.1 Arabidopsis lyrata fgenesh2_kg.6__165__AT5G02530.1 N 0.729
cassava35480.valid.m1 Manihot esculenta cassava35480.valid.m1 N 0.729
LOC_Os12g01010 Oryza sativa LOC_Os12g01010 N 0.714
ppa010358m Prunus persica ppa010358m N 0.714
MDP0000251188 Malus x domestica MDP0000251188 N 0.700
MDP0000153894 Malus x domestica MDP0000153894 N 0.700
Medtr4g078540 Medicago truncatula Medtr4g078540 N 0.700
LOC_Os11g01020 Oryza sativa LOC_Os11g01020 N 0.700
BGIOSIBCE007271 Oryza indica BGIOSIBCE007271 N 0.700
BGIOSIBCE007269 Oryza indica BGIOSIBCE007269 N 0.700
MDP0000119945 Malus x domestica MDP0000119945 N 0.700