LjSGA_065336.1 (Lotus japonicus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 LjSGA_065336.1 T57233_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
LjSGA_065336.1 RRM 1 54

Links

Other RRM family RBPs
Other Lotus japonicus RBPs

25 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PDK_20s1328531g001 Phoenix dactylifera PDK_20s1328531g001 N 0.907
PDK_20s130094197g001 Phoenix dactylifera PDK_20s130094197g001 N 0.860
PDK_20s1300711g001 Phoenix dactylifera PDK_20s1300711g001 N 0.855
PK26404.1 Cannabis sativa PK26404.1 N 0.852
chr3.LjT39G24.170.nd Lotus japonicus chr3.LjT39G24.170.nd N 0.825
MDP0000320467 Malus x domestica MDP0000320467 N 0.778
Medtr4g078540 Medicago truncatula Medtr4g078540 N 0.729
B9HMF0_POPTR Populus trichocarpa POPTR_0008s05270 N 0.727
B9HPJ8_POPTR Populus trichocarpa POPTR_0009s03370 N 0.722
PDK_20s1812851g001 Phoenix dactylifera PDK_20s1812851g001 N 0.719
Glyma13g40930.1 Glycine max Glyma13g40930.1 N 0.714
Glyma11g15040.1 Glycine max Glyma11g15040.1 N 0.714
ppa010358m Prunus persica ppa010358m N 0.714
GSVIVG00025009001 Vitis vinifera GSVIVG00025009001 N 0.714
LjSGA_111920.2 Lotus japonicus LjSGA_111920.2 N 0.704
cassava37747.valid.m1 Manihot esculenta cassava37747.valid.m1 N 0.700
Glyma12g07010.1 Glycine max Glyma12g07010.1 N 0.700
cassava37746.valid.m1 Manihot esculenta cassava37746.valid.m1 N 0.700
XM_002873013.1 Arabidopsis lyrata fgenesh2_kg.6__165__AT5G02530.1 N 0.700
MDP0000153894 Malus x domestica MDP0000153894 N 0.700
MDP0000119945 Malus x domestica MDP0000119945 N 0.700
MDP0000251188 Malus x domestica MDP0000251188 N 0.700
AT5G02530 Arabidopsis thaliana AT5G02530-TAIR-G N 0.700
29876.m000260 Ricinus communis 29876.m000260 N 0.700
cassava35480.valid.m1 Manihot esculenta cassava35480.valid.m1 N 0.700