ELAVL1 (Oryzias latipes)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSORLG00000000087 T40067_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ELAVL1
M327_0.6 		Homo sapiens Sequence logo not available KKNWWDNNNUKNNUUNUNNH RIP-chip
Cook et al.(2011)
714_14981256 		0.858
ELAVL1
M232_0.6 		Homo sapiens UUUUUUK RNAcompete
Ray et al.(2013)
RNCMPT00274 		0.858
ELAVL1
M127_0.6 		Homo sapiens UUKRUUU RNAcompete
Ray et al.(2013)
RNCMPT00136 		0.858
ELAVL1
M112_0.6 		Homo sapiens UUURKUU RNAcompete
Ray et al.(2013)
RNCMPT00117 		0.858
ELAVL1
M108_0.6 		Homo sapiens UUWGUUU RNAcompete
Ray et al.(2013)
RNCMPT00112 		0.858
ELAVL1
M031_0.6 		Homo sapiens UUDUUUU RNAcompete
Ray et al.(2013)
RNCMPT00032 		0.858
ELAVL2
M328_0.6 		Homo sapiens MUYCUUUWUWUUY SELEX
Cook et al.(2011)
782_8497264 		0.737
ELAVL2
M330_0.6 		Homo sapiens RWUUUAUUUWR SELEX
Cook et al.(2011)
784_7972035 		0.737
ELAVL2
M329_0.6 		Homo sapiens RWUUUAUUUWR SELEX
Cook et al.(2011)
783_7972035 		0.737
ELAVL4
M315_0.6 		Homo sapiens Sequence logo not available UUUUUUUUUWAAA RIP-chip
Cook et al.(2011)
619_19846595.2 		0.723
ELAVL4
M314_0.6 		Homo sapiens Sequence logo not available KUUUGUUUKKUUU RIP-chip
Cook et al.(2011)
619_19846595.1 		0.723
ELAVL4
M313_0.6 		Homo sapiens Sequence logo not available CYCUCCYUCYCYC RIP-chip
Cook et al.(2011)
619_19846595 		0.723
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSORLP00000000111 RRM 54 124
ENSORLP00000000111 RRM 140 208
ENSORLP00000000111 RRM 289 359
ENSORLP00000000112 RRM 30 100
ENSORLP00000000112 RRM 116 184
ENSORLP00000000112 RRM 252 322

Links

Other RRM family RBPs
Other Oryzias latipes RBPs

157 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Genemark.10526_g Serpula lacrymans Genemark.10526_g N 0.000
Genemark.10975_g Serpula lacrymans Genemark.10975_g N 0.000
Genemark.11049_g Serpula lacrymans Genemark.11049_g N 0.000
Genemark.11600_g Serpula lacrymans Genemark.11600_g N 0.000
Genemark.12016_g Serpula lacrymans Genemark.12016_g N 0.000
Genemark.12031_g Serpula lacrymans Genemark.12031_g N 0.000
Genemark.12122_g Serpula lacrymans Genemark.12122_g N 0.000
Genemark.12199_g Serpula lacrymans Genemark.12199_g N 0.000
Genemark.1877_g Serpula lacrymans Genemark.1877_g N 0.000
Genemark.2652_g Serpula lacrymans Genemark.2652_g N 0.000
Genemark.3014_g Serpula lacrymans Genemark.3014_g N 0.000
Genemark.3124_g Serpula lacrymans Genemark.3124_g N 0.000
Genemark.446_g Serpula lacrymans Genemark.446_g N 0.000
Genemark.469_g Serpula lacrymans Genemark.469_g N 0.000
Genemark.4749_g Serpula lacrymans Genemark.4749_g N 0.000
Genemark.4999_g Serpula lacrymans Genemark.4999_g N 0.000
Genemark.618_g Serpula lacrymans Genemark.618_g N 0.000
Genemark.7257_g Serpula lacrymans Genemark.7257_g N 0.000
Genemark.8882_g Serpula lacrymans Genemark.8882_g N 0.000
Genemark.940_g Serpula lacrymans Genemark.940_g N 0.000