ELAVL1 (Oryzias latipes)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSORLG00000000087 T40067_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ELAVL1
M327_0.6 		Homo sapiens Sequence logo not available KKNWWDNNNUKNNUUNUNNH RIP-chip
Cook et al.(2011)
714_14981256 		0.858
ELAVL1
M232_0.6 		Homo sapiens UUUUUUK RNAcompete
Ray et al.(2013)
RNCMPT00274 		0.858
ELAVL1
M127_0.6 		Homo sapiens UUKRUUU RNAcompete
Ray et al.(2013)
RNCMPT00136 		0.858
ELAVL1
M112_0.6 		Homo sapiens UUURKUU RNAcompete
Ray et al.(2013)
RNCMPT00117 		0.858
ELAVL1
M108_0.6 		Homo sapiens UUWGUUU RNAcompete
Ray et al.(2013)
RNCMPT00112 		0.858
ELAVL1
M031_0.6 		Homo sapiens UUDUUUU RNAcompete
Ray et al.(2013)
RNCMPT00032 		0.858
ELAVL2
M329_0.6 		Homo sapiens RWUUUAUUUWR SELEX
Cook et al.(2011)
783_7972035 		0.737
ELAVL2
M328_0.6 		Homo sapiens MUYCUUUWUWUUY SELEX
Cook et al.(2011)
782_8497264 		0.737
ELAVL2
M330_0.6 		Homo sapiens RWUUUAUUUWR SELEX
Cook et al.(2011)
784_7972035 		0.737
ELAVL4
M315_0.6 		Homo sapiens Sequence logo not available UUUUUUUUUWAAA RIP-chip
Cook et al.(2011)
619_19846595.2 		0.723
ELAVL4
M314_0.6 		Homo sapiens Sequence logo not available KUUUGUUUKKUUU RIP-chip
Cook et al.(2011)
619_19846595.1 		0.723
ELAVL4
M313_0.6 		Homo sapiens Sequence logo not available CYCUCCYUCYCYC RIP-chip
Cook et al.(2011)
619_19846595 		0.723
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSORLP00000000111 RRM 54 124
ENSORLP00000000111 RRM 140 208
ENSORLP00000000111 RRM 289 359
ENSORLP00000000112 RRM 30 100
ENSORLP00000000112 RRM 116 184
ENSORLP00000000112 RRM 252 322

Links

Other RRM family RBPs
Other Oryzias latipes RBPs

157 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ELAVL1 Gasterosteus aculeatus ENSGACG00000013329 I 0.934
ELAVL1 Takifugu rubripes ENSTRUG00000007296 I 0.886
elavl1 Danio rerio ENSDARG00000038695 I 0.867
elavl1 Xenopus tropicalis ENSXETG00000008752 I 0.863
ELAVL1 Tarsius syrichta ENSTSYG00000008248 I 0.858
ELAVL1 Gorilla gorilla ENSGGOG00000006100 I 0.858
AAH86269 Xenopus laevis AAH86269 I 0.858
Ame_R010167 Ailuropoda melanoleuca Ame_R010167 I 0.858
ELAVL1 Loxodonta africana ENSLAFG00000004219 I 0.858
ENSCAFG00000018353 Canis familiaris ENSCAFG00000018353 I 0.858
ELAVL1 Homo sapiens ENSG00000066044 D 0.858
ELAVL1 Otolemur garnettii ENSOGAG00000012877 I 0.858
Elavl1 Rattus norvegicus ENSRNOG00000001069 I 0.858
ELAVL1 Monodelphis domestica ENSMODG00000005041 I 0.858
ENSPPYG00000009496 Pongo pygmaeus ENSPPYG00000009496 I 0.858
ELAVL1 Microcebus murinus ENSMICG00000009699 I 0.858
ELAVL1 Felis catus ENSFCAG00000014947 I 0.858
Elavl1 Mus musculus ENSMUSG00000040028 I 0.858
ELAVL1 Macaca mulatta ENSMMUG00000006544 I 0.858
ELAVL1 Pan troglodytes ENSPTRG00000010413 I 0.858
Q5U259 Xenopus laevis Q5U259 I 0.858
Elavl1 Dipodomys ordii ENSDORG00000009158 I 0.858
ELAVL1 Gasterosteus aculeatus ENSGACG00000010657 I 0.855
Q3ZCE2_BOVIN Bos taurus ENSBTAG00000000613 I 0.854
ELAVL1 Taeniopygia guttata ENSTGUG00000000118 I 0.854
ELAVL1 Myotis lucifugus ENSMLUG00000008101 I 0.854
ELAVL1 Meleagris gallopavo ENSMGAG00000001015 I 0.854
AAA96942 Xenopus laevis AAA96942 I 0.854
LOC100060819 Equus caballus ENSECAG00000019459 I 0.854
Q9PW24_CHICK Gallus gallus ENSGALG00000000726 I 0.854
D7R608_RABIT Oryctolagus cuniculus ENSOCUG00000015871 I 0.849
ELAVL1 Oryzias latipes ENSORLG00000012435 I 0.849
ELAVL1 Ochotona princeps ENSOPRG00000009691 I 0.849
ELAVL1 Sus scrofa ENSSSCG00000013592 I 0.844
ELAVL1 Spermophilus tridecemlineatus ENSSTOG00000009130 I 0.844
ELAVL1 Dasypus novemcinctus ENSDNOG00000008797 I 0.844
hug Danio rerio ENSDARG00000016405 I 0.844
ELAVL1 Tetraodon nigroviridis ENSTNIG00000019823 I 0.816
AAI16460 Xenopus laevis AAI16460 I 0.815
Q1JQ73 Xenopus laevis Q1JQ73 I 0.815
ELAVL1 Takifugu rubripes ENSTRUG00000004559 I 0.810
ELAVL1 Tetraodon nigroviridis ENSTNIG00000004733 I 0.754
ELAVL2 Gallus gallus ENSGALG00000015799 I 0.742
ELAVL2 Oryzias latipes ENSORLG00000004217 I 0.741
ELAVL2 Echinops telfairi ENSETEG00000006134 I 0.737
ELAVL2 Ochotona princeps ENSOPRG00000012874 I 0.737
ELAVL2 Homo sapiens ENSG00000107105 D 0.737
AAH94189 Xenopus laevis AAH94189 I 0.737
AAI70539 Xenopus laevis AAI70539 I 0.737
LOC100015949 Monodelphis domestica ENSMODG00000003936 I 0.737
ENSPPYG00000019166 Pongo pygmaeus ENSPPYG00000019166 I 0.737
Q91903 Xenopus laevis Q91903 I 0.737
Elavl2 Rattus norvegicus ENSRNOG00000006853 I 0.737
ELAVL2 Oryctolagus cuniculus ENSOCUG00000005891 I 0.737
ELAVL2 Pan troglodytes ENSPTRG00000020830 I 0.737
ELAVL2 Pteropus vampyrus ENSPVAG00000002688 I 0.737
ELAVL2 Canis familiaris ENSCAFG00000001688 I 0.737
ELAVL2 Tursiops truncatus ENSTTRG00000011656 I 0.737
ELAVL2 Vicugna pacos ENSVPAG00000005109 I 0.737
ELAVL2 Equus caballus ENSECAG00000020142 I 0.737
Elavl2 Dipodomys ordii ENSDORG00000010437 I 0.737
ELAVL2 Callithrix jacchus ENSCJAG00000008064 I 0.737
Elavl2 Mus musculus ENSMUSG00000008489 I 0.737
AAA96943 Xenopus laevis AAA96943 I 0.737
ELAVL2 Sus scrofa ENSSSCG00000005130 I 0.737
ELAVL2 Sorex araneus ENSSARG00000005702 I 0.737
ELAVL2 Loxodonta africana ENSLAFG00000009938 I 0.737
ELAVL2 Cavia porcellus ENSCPOG00000010472 I 0.737
LOC708195 Macaca mulatta ENSMMUG00000010038 I 0.737
ELAVL2 Gorilla gorilla ENSGGOG00000003678 I 0.737
Ame_R004766 Ailuropoda melanoleuca Ame_R004766 I 0.737
ELAVL2 Anolis carolinensis ENSACAG00000017521 I 0.737
CAA59430 Xenopus laevis CAA59430 I 0.732
ELAVL2 Myotis lucifugus ENSMLUG00000014210 I 0.732
elavl2 Danio rerio ENSDARG00000040732 I 0.732
ELAVL2 Takifugu rubripes ENSTRUG00000007867 I 0.731
ELAVL2 Gasterosteus aculeatus ENSGACG00000019484 I 0.728
ELAVL4 Meleagris gallopavo ENSMGAG00000010928 I 0.728
ELAVL2 Tetraodon nigroviridis ENSTNIG00000011312 I 0.728
ELAVL2 Tarsius syrichta ENSTSYG00000013066 I 0.725
ELAVL3 Takifugu rubripes ENSTRUG00000010719 I 0.725
elavl3 Danio rerio ENSDARG00000014420 I 0.725
ELAVL3 Gasterosteus aculeatus ENSGACG00000013839 I 0.725
ELAVL4 Macaca mulatta ENSMMUG00000021933 I 0.723
ELAVL4 Myotis lucifugus ENSMLUG00000006226 I 0.723
ELAVL4 Microcebus murinus ENSMICG00000003286 I 0.723
ELAVL4 Macropus eugenii ENSMEUG00000007145 I 0.723
ELAVL4 Loxodonta africana ENSLAFG00000001087 I 0.723
ELAVL4 Gorilla gorilla ENSGGOG00000000634 I 0.723
ELAVL4 Gasterosteus aculeatus ENSGACG00000011152 I 0.723
ELAVL4 Monodelphis domestica ENSMODG00000001300 I 0.723
ELAVL4 Erinaceus europaeus ENSEEUG00000008766 I 0.723
LOC100051268 Equus caballus ENSECAG00000022284 I 0.723
ELAVL4 Homo sapiens ENSG00000162374 D 0.723
Q9PW22_CHICK Gallus gallus ENSGALG00000010533 I 0.723
Elavl4 Dipodomys ordii ENSDORG00000012729 I 0.723
CBU92440 Xenopus laevis CBU92440 I 0.723
ELAVL4 Tetraodon nigroviridis ENSTNIG00000015485 I 0.723
ELAVL4 Taeniopygia guttata ENSTGUG00000008597 I 0.723
ELAVL2 Taeniopygia guttata ENSTGUG00000001349 I 0.723
ELAVL4 Takifugu rubripes ENSTRUG00000000523 I 0.723
ELAVL4 Tarsius syrichta ENSTSYG00000004130 I 0.723
elavl4 Xenopus tropicalis ENSXETG00000008680 I 0.723
ELAVL4 Dasypus novemcinctus ENSDNOG00000002932 I 0.723
ELAVL4 Sorex araneus ENSSARG00000010733 I 0.723
Elavl4 Rattus norvegicus ENSRNOG00000023601 I 0.723
ELAVL4 Procavia capensis ENSPCAG00000008215 I 0.723
ELAVL4 Oryzias latipes ENSORLG00000017130 I 0.723
ELAVL4 Ochotona princeps ENSOPRG00000015300 I 0.723
ENSPPYG00000001367 Pongo pygmaeus ENSPPYG00000001367 I 0.723
ELAVL4 Otolemur garnettii ENSOGAG00000016990 I 0.723
ELAVL4 Pan troglodytes ENSPTRG00000000723 I 0.723
ELAVL4 Oryctolagus cuniculus ENSOCUG00000016262 I 0.723
ELAVL4 Vicugna pacos ENSVPAG00000011606 I 0.723
ELAVL4 Anolis carolinensis ENSACAG00000004527 I 0.723
CBF67567 Xenopus laevis CBF67567 I 0.723
Ame_R009760 Ailuropoda melanoleuca Ame_R009760 I 0.723
A2VDK5_BOVIN Bos taurus ENSBTAG00000021046 I 0.723
ELAVL4 Canis familiaris ENSCAFG00000003927 I 0.723
ELAVL4 Choloepus hoffmanni ENSCHOG00000002464 I 0.723
ELAVL4 Callithrix jacchus ENSCJAG00000013725 I 0.723
AAA96945 Xenopus laevis AAA96945 I 0.723
Elavl4 Mus musculus ENSMUSG00000028546 I 0.723
ENSCPOG00000002044 Cavia porcellus ENSCPOG00000002044 I 0.723
AAH99348 Xenopus laevis AAH99348 I 0.723
elavl4 Danio rerio ENSDARG00000045639 I 0.721
ELAVL3 Oryzias latipes ENSORLG00000005379 I 0.718
ELAVL1 Pteropus vampyrus ENSPVAG00000002299 I 0.717
ELAVL1 Sorex araneus ENSSARG00000013091 I 0.717
ELAVL3 Tetraodon nigroviridis ENSTNIG00000018572 I 0.715
AAA96944 Xenopus laevis AAA96944 I 0.712
ELAVL1 Tursiops truncatus ENSTTRG00000010180 I 0.712
AAI69769 Xenopus laevis AAI69769 I 0.712
Q91584 Xenopus laevis Q91584 I 0.712
ELAVL3 Macropus eugenii ENSMEUG00000016706 I 0.712
Elavl3 Mus musculus ENSMUSG00000003410 I 0.711
ELAVL3 Otolemur garnettii ENSOGAG00000007072 I 0.711
ELAVL3 Bos taurus ENSBTAG00000014412 I 0.711
ELAVL3 Tursiops truncatus ENSTTRG00000001789 I 0.711
ELAVL3 Canis familiaris ENSCAFG00000017350 I 0.711
ELAVL3 Loxodonta africana ENSLAFG00000005013 I 0.711
ELAVL3 Sus scrofa ENSSSCG00000013617 I 0.711
Elavl3 Rattus norvegicus ENSRNOG00000013752 I 0.711
ELAVL3 Gorilla gorilla ENSGGOG00000008635 I 0.711
Ame_R009570 Ailuropoda melanoleuca Ame_R009570 I 0.711
ELAVL3 Homo sapiens ENSG00000196361 I 0.711
ELAVL3 Pteropus vampyrus ENSPVAG00000014893 I 0.711
elavl3 Xenopus tropicalis ENSXETG00000016741 I 0.709
ELAVL3 Anolis carolinensis ENSACAG00000016958 I 0.708
ELAVL1 Cavia porcellus ENSCPOG00000011884 I 0.706
amel4_ncbi_hmm5219 Apis mellifera amel4_ncbi_hmm5219 I 0.703
ELAVL2 Procavia capensis ENSPCAG00000014998 I 0.701
ELAVL1 Procavia capensis ENSPCAG00000016012 I 0.701
Elavl3 Dipodomys ordii ENSDORG00000002538 I 0.701
ENSCHOG00000006810 Choloepus hoffmanni ENSCHOG00000006810 I 0.701
ELAVL1 Echinops telfairi ENSETEG00000012985 I 0.701