CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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XR_023431.1
(
Pan troglodytes
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSPTRG00000013506
T40723_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSPTRP00000023194
RRM
77
142
LIVENLSSRCSWQDLKDFMRQAGEVTYADAHKERTNEGVIEFRSYSDMKRALDKLDGTEINGRNIR
Links
Other
RRM
family RBPs
Other
Pan troglodytes
RBPs
12 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
qkr58E-2
Drosophila melanogaster
FBgn0022985
N
0.000
qkr54B
Drosophila melanogaster
FBgn0022987
N
0.000
GA18453-RA
Drosophila pseudoobscura
FBgn0078455
N
0.000
GA19155-RA
Drosophila pseudoobscura
FBgn0079152
N
0.000
GF11890
Drosophila ananassae
FBgn0088930
N
0.000
GF13124
Drosophila ananassae
FBgn0090157
N
0.000
GG20683
Drosophila erecta
FBgn0112870
N
0.000
GG22189
Drosophila erecta
FBgn0114363
N
0.000
GH21366
Drosophila grimshawi
FBgn0128828
N
0.000
GH21401
Drosophila grimshawi
FBgn0128863
N
0.000
GI18580
Drosophila mojavensis
FBgn0141319
N
0.000
GI20561
Drosophila mojavensis
FBgn0143297
N
0.000
GL11428
Drosophila persimilis
FBgn0149037
N
0.000
GL17545
Drosophila persimilis
FBgn0155148
N
0.000
GM15910
Drosophila sechellia
FBgn0170826
N
0.000
GM21780
Drosophila sechellia
FBgn0176658
N
0.000
GD11271
Drosophila simulans
FBgn0183021
N
0.000
GD11668
Drosophila simulans
FBgn0183408
N
0.000
GJ20374
Drosophila virilis
FBgn0207514
N
0.000
GJ22415
Drosophila virilis
FBgn0209527
N
0.000
GK22901
Drosophila willistoni
FBgn0224863
N
0.000
GE11667
Drosophila yakuba
FBgn0229463
N
0.000
GE14183
Drosophila yakuba
FBgn0231805
N
0.000