A1cf (Rattus norvegicus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSRNOG00000033195 T41222_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ENSGALG00000003765
M244_0.6 		Gallus gallus DUAAUUV RNAcompete
Ray et al.(2013)
RNCMPT00291 		0.936
A1CF
M001_0.6 		Homo sapiens WUAAUUR RNAcompete
Ray et al.(2013)
RNCMPT00001 		0.931
ENSXETG00000012802
M235_0.6 		Xenopus tropicalis GAUGAWH RNAcompete
Ray et al.(2013)
RNCMPT00280 		0.704
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSRNOP00000043770 RRM 58 127
ENSRNOP00000043770 RRM 138 204
ENSRNOP00000043770 RRM 233 297
ENSRNOP00000062802 RRM 58 127
ENSRNOP00000062802 RRM 138 204
ENSRNOP00000062802 RRM 233 297

Links

Other RRM family RBPs
Other Rattus norvegicus RBPs

48 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
CPIJ015349 Culex quinquefasciatus CPIJ015349 N 0.000
CpipJ_CPIJ006994 Culex pipiens CpipJ_CPIJ006994 N 0.000
CpipJ_CPIJ007614 Culex pipiens CpipJ_CPIJ007614 N 0.000
CpipJ_CPIJ009289 Culex pipiens CpipJ_CPIJ009289 N 0.000
CpipJ_CPIJ009564 Culex pipiens CpipJ_CPIJ009564 N 0.000
CpipJ_CPIJ014538 Culex pipiens CpipJ_CPIJ014538 N 0.000