A1cf (Rattus norvegicus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSRNOG00000033195 T41222_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ENSGALG00000003765
M244_0.6 		Gallus gallus DUAAUUV RNAcompete
Ray et al.(2013)
RNCMPT00291 		0.936
A1CF
M001_0.6 		Homo sapiens WUAAUUR RNAcompete
Ray et al.(2013)
RNCMPT00001 		0.931
ENSXETG00000012802
M235_0.6 		Xenopus tropicalis GAUGAWH RNAcompete
Ray et al.(2013)
RNCMPT00280 		0.704
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSRNOP00000043770 RRM 58 127
ENSRNOP00000043770 RRM 138 204
ENSRNOP00000043770 RRM 233 297
ENSRNOP00000062802 RRM 58 127
ENSRNOP00000062802 RRM 138 204
ENSRNOP00000062802 RRM 233 297

Links

Other RRM family RBPs
Other Rattus norvegicus RBPs

48 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
A1cf Mus musculus ENSMUSG00000052595 I 0.990
A1CF Callithrix jacchus ENSCJAG00000005045 I 0.985
A1CF Loxodonta africana ENSLAFG00000015462 I 0.985
ENSPPYG00000002819 Pongo pygmaeus ENSPPYG00000002819 I 0.985
A1CF Choloepus hoffmanni ENSCHOG00000009089 I 0.985
A1CF Macaca mulatta ENSMMUG00000007077 I 0.985
A1CF Sus scrofa ENSSSCG00000010431 I 0.985
A1CF Equus caballus ENSECAG00000010424 I 0.980
A1CF Tarsius syrichta ENSTSYG00000001755 I 0.980
A1CF Bos taurus ENSBTAG00000021195 I 0.980
A1CF Cavia porcellus ENSCPOG00000009807 I 0.980
A1CF Oryctolagus cuniculus ENSOCUG00000011587 I 0.965
Ame_R002153 Ailuropoda melanoleuca Ame_R002153 I 0.960
A1CF Taeniopygia guttata ENSTGUG00000005090 I 0.955
A1CF Ornithorhynchus anatinus ENSOANG00000007360 I 0.941
A1CF Gorilla gorilla ENSGGOG00000009670 I 0.936
A1CF Meleagris gallopavo ENSMGAG00000001507 I 0.936
ENSGALG00000003765 Gallus gallus ENSGALG00000003765 D 0.936
A1CF Echinops telfairi ENSETEG00000012527 I 0.936
A1CF Pan troglodytes ENSPTRG00000002508 I 0.931
A1CF Homo sapiens ENSG00000148584 D 0.931
A1CF Canis familiaris ENSCAFG00000015581 I 0.931
A1CF Monodelphis domestica ENSMODG00000016478 I 0.926
A1CF Macropus eugenii ENSMEUG00000015909 I 0.916
A1CF Anolis carolinensis ENSACAG00000015269 I 0.916
a1cf Danio rerio ENSDARG00000002968 I 0.901
A1CF Dasypus novemcinctus ENSDNOG00000002829 I 0.893
A1CF Takifugu rubripes ENSTRUG00000001982 I 0.876
A1CF Vicugna pacos ENSVPAG00000006130 I 0.876
A1cf Dipodomys ordii ENSDORG00000016548 I 0.876
AAH74127 Xenopus laevis AAH74127 I 0.871
A1CF Gasterosteus aculeatus ENSGACG00000010241 I 0.871
A1CF Oryzias latipes ENSORLG00000013342 I 0.871
A1CF Tetraodon nigroviridis ENSTNIG00000003580 I 0.868
A1CF Ochotona princeps ENSOPRG00000010667 I 0.817
A1CF Tursiops truncatus ENSTTRG00000013190 I 0.812
A1CF Sorex araneus ENSSARG00000005940 I 0.799
A1CF Felis catus ENSFCAG00000011179 I 0.752
A1CF Microcebus murinus ENSMICG00000003377 I 0.743
e_gw.262.16.1 Branchiostoma floridae e_gw.262.16.1 I 0.717
RBM47 Tetraodon nigroviridis ENSTNIG00000006127 I 0.704
ENSXETG00000012802 Xenopus tropicalis ENSXETG00000012802 D 0.704
RBM47 Gasterosteus aculeatus ENSGACG00000016223 I 0.704
RBM46 Equus caballus ENSECAG00000007649 I 0.704
RBM47 Takifugu rubripes ENSTRUG00000014050 I 0.704
a1cf Xenopus tropicalis ENSXETG00000006611 I 0.703
e_gw.60.249.1 Branchiostoma floridae e_gw.60.249.1 I 0.702