ROD1 (Sus scrofa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSSSCG00000005466 T41423_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PTBP1
M303_0.6 		Homo sapiens Sequence logo not available UCUU SELEX
Cook et al.(2011)
46_9214659 		0.798
PTBP1
M228_0.6 		Homo sapiens HYUUUYU RNAcompete
Ray et al.(2013)
RNCMPT00269 		0.798
PTBP1
M227_0.6 		Homo sapiens HYUUUYU RNAcompete
Ray et al.(2013)
RNCMPT00268 		0.798
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSSSCP00000005863 RRM 47 100
ENSSSCP00000005863 RRM 170 236
ENSSSCP00000005863 RRM 348 414
ENSSSCP00000005863 RRM 465 529

Links

Other RRM family RBPs
Other Sus scrofa RBPs

87 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ARB_02022 Arthroderma benhamiae ARB_02022 N 0.000
MCYG_08782 Microsporum canis MCYG_08782 N 0.000
TERG_00147 Trichophyton rubrum TERG_00147 N 0.000
TESG_05772 Trichophyton tonsurans TESG_05772 N 0.000
TRV_05851 Trichophyton verrucosum TRV_05851 N 0.000