PTBP1 (Homo sapiens)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSG00000011304 T37164_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PTBP1
M303_0.6		 Homo sapiens Sequence logo not available UCUU SELEX
Cook et al.(2011)
46_9214659 		(Direct)
PTBP1
M227_0.6		 Homo sapiens HYUUUYU RNAcompete
Ray et al.(2013)
RNCMPT00268 		(Direct)
PTBP1
M228_0.6		 Homo sapiens HYUUUYU RNAcompete
Ray et al.(2013)
RNCMPT00269 		(Direct)

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M227_0.6 RRM 61 117
M227_0.6 RRM 186 252
M227_0.6 RRM 339 405
M227_0.6 RRM 456 520
M228_0.6 RRM 61 117
M228_0.6 RRM 186 252
M228_0.6 RRM 339 405
M228_0.6 RRM 456 520

RNA Binding Domains

Protein ID Domain From To Sequence
ENSP00000014112 RRM 61 117
ENSP00000014112 RRM 186 252
ENSP00000014112 RRM 339 405
ENSP00000014112 RRM 456 520
ENSP00000342332 RRM 12 71
ENSP00000342332 RRM 122 187
ENSP00000349428 RRM 61 117
ENSP00000349428 RRM 186 252
ENSP00000349428 RRM 365 431
ENSP00000349428 RRM 482 546
ENSP00000408096 RRM 61 117
ENSP00000408096 RRM 186 252
ENSP00000408096 RRM 358 424
ENSP00000408096 RRM 475 539

Links

Other RRM family RBPs
Other Homo sapiens RBPs

91 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
XR_025154.1 Pan troglodytes ENSPTRG00000010165 I 1.000
ENSPPYG00000009289 Pongo pygmaeus ENSPPYG00000009289 I 1.000
PTBP1 Macaca mulatta ENSMMUG00000016450 I 1.000
PTBP1 Callithrix jacchus ENSCJAG00000020162 I 0.992
PTBP1 Sus scrofa ENSSSCG00000013421 I 0.973
PTBP1 Cavia porcellus ENSCPOG00000025512 I 0.973
PTBP1 Canis familiaris ENSCAFG00000019693 I 0.973
Ptbp1 Mus musculus ENSMUSG00000006498 I 0.961
PTBP1 Pteropus vampyrus ENSPVAG00000008288 I 0.961
Ptbp1 Rattus norvegicus ENSRNOG00000010448 I 0.957
PTBP1 Tursiops truncatus ENSTTRG00000003439 I 0.953
PTBP1 Equus caballus ENSECAG00000018845 I 0.949
Q5F456_CHICK Gallus gallus ENSGALG00000001962 I 0.949
PTBP1 Meleagris gallopavo ENSMGAG00000003503 I 0.949
PTBP1 Monodelphis domestica ENSMODG00000006302 I 0.938
PTBP1 Taeniopygia guttata ENSTGUG00000000641 I 0.938
PTBP1 Macropus eugenii ENSMEUG00000006710 I 0.938
PTBP1 Ornithorhynchus anatinus ENSOANG00000009191 I 0.926
ENSMLUG00000003320 Myotis lucifugus ENSMLUG00000003320 I 0.906
Ptbp1 Dipodomys ordii ENSDORG00000002835 I 0.906
PTBP1 Loxodonta africana ENSLAFG00000027110 I 0.898
AAH45068 Xenopus laevis AAH45068 I 0.895
AAF00041 Xenopus laevis AAF00041 I 0.891
ENSETEG00000006890 Echinops telfairi ENSETEG00000006890 I 0.867
ptbp1 Xenopus tropicalis ENSXETG00000021661 I 0.840
ptbp1a Danio rerio ENSDARG00000019362 I 0.840
PTBP1 Procavia capensis ENSPCAG00000007614 I 0.840
PTBP1 Gasterosteus aculeatus ENSGACG00000011048 I 0.825
AAH97557 Xenopus laevis AAH97557 I 0.821
ptbp1b Danio rerio ENSDARG00000031907 I 0.820
PTBP1 Oryzias latipes ENSORLG00000011430 I 0.815
PTBP1 Takifugu rubripes ENSTRUG00000011360 I 0.809
PTBP1 Oryzias latipes ENSORLG00000014019 I 0.809
rod1 Xenopus tropicalis ENSXETG00000002225 I 0.805
ROD1 Equus caballus ENSECAG00000021243 I 0.805
ROD1 Sus scrofa ENSSSCG00000005466 I 0.805
PTBP2 Anolis carolinensis ENSACAG00000005600 I 0.802
Q9YI60_CHICK Gallus gallus ENSGALG00000005552 I 0.802
PTBP2 Meleagris gallopavo ENSMGAG00000007308 I 0.802
PTBP2 Loxodonta africana ENSLAFG00000017343 I 0.802
ROD1 Danio rerio ENSDARG00000043757 I 0.801
Ame_R002925 Ailuropoda melanoleuca Ame_R002925 I 0.798
PTBP2 Gorilla gorilla ENSGGOG00000000659 I 0.798
PTBP2 Tarsius syrichta ENSTSYG00000002576 I 0.798
ROD1 Monodelphis domestica ENSMODG00000005502 I 0.798
PTBP2 Vicugna pacos ENSVPAG00000002841 I 0.798
Ptbp2 Mus musculus ENSMUSG00000028134 I 0.798
PTBP2 Cavia porcellus ENSCPOG00000003762 I 0.798
PTBP2 Macaca mulatta ENSMMUG00000016130 I 0.798
PTBP2 Homo sapiens ENSG00000117569 I 0.798
ROD1 Cavia porcellus ENSCPOG00000011586 I 0.798
PTBP2 Ornithorhynchus anatinus ENSOANG00000004656 I 0.798
PTBP2 Canis familiaris ENSCAFG00000020080 I 0.798
PTBP2 Tursiops truncatus ENSTTRG00000012904 I 0.798
Ptbp2 Rattus norvegicus ENSRNOG00000010827 I 0.798
ROD1 Oryctolagus cuniculus ENSOCUG00000017670 I 0.798
PTBP2 Oryctolagus cuniculus ENSOCUG00000017608 I 0.798
PTBP2 Pan troglodytes ENSPTRG00000000987 I 0.798
ENSPPYG00000001132 Pongo pygmaeus ENSPPYG00000001132 I 0.798
LOC100057336 Equus caballus ENSECAG00000015783 I 0.795
ROD1 Gorilla gorilla ENSGGOG00000001755 I 0.794
PTBP2 Monodelphis domestica ENSMODG00000004211 I 0.794
ROD1 Homo sapiens ENSG00000119314 I 0.794
Rod1 Mus musculus ENSMUSG00000028382 I 0.794
ENSPPYG00000019504 Pongo pygmaeus ENSPPYG00000019504 I 0.794
ROD1 Pan troglodytes ENSPTRG00000021263 I 0.794
Rod1 Rattus norvegicus ENSRNOG00000016334 I 0.794
ROD1 Macaca mulatta ENSMMUG00000000464 I 0.794
ROD1 Bos taurus ENSBTAG00000016750 I 0.793
PTBP2 Taeniopygia guttata ENSTGUG00000005558 I 0.790
ROD1 Anolis carolinensis ENSACAG00000017316 I 0.790
ROD1 Loxodonta africana ENSLAFG00000011358 I 0.790
ENSRNOG00000027820 Rattus norvegicus ENSRNOG00000027820 I 0.787
PTBP2 Myotis lucifugus ENSMLUG00000002522 I 0.782
PTBP1 Takifugu rubripes ENSTRUG00000010168 I 0.782
ROD1 Callithrix jacchus ENSCJAG00000017686 I 0.782
PTBP2 Danio rerio ENSDARG00000015901 I 0.770
PTBP2 Oryzias latipes ENSORLG00000013557 I 0.769
PTBP2 Tetraodon nigroviridis ENSTNIG00000018950 I 0.764
ROD1 Canis familiaris ENSCAFG00000003015 I 0.763
PTBP2 Gasterosteus aculeatus ENSGACG00000014892 I 0.754
ROD1 Takifugu rubripes ENSTRUG00000007042 I 0.747
PTBP2 Oryzias latipes ENSORLG00000019191 I 0.747
ROD1 Tetraodon nigroviridis ENSTNIG00000002790 I 0.744
Smptb Rattus norvegicus ENSRNOG00000028033 I 0.728
PTBP1 Gasterosteus aculeatus ENSGACG00000013587 I 0.727
PTBP2 Gasterosteus aculeatus ENSGACG00000000940 I 0.721
PTBP2 Microcebus murinus ENSMICG00000008543 I 0.720
PTBP2 Spermophilus tridecemlineatus ENSSTOG00000011727 I 0.712
PTBP1 Spermophilus tridecemlineatus ENSSTOG00000000034 I 0.709