ROD1 (Sus scrofa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSSSCG00000005466 T41423_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PTBP1
M303_0.6 		Homo sapiens Sequence logo not available UCUU SELEX
Cook et al.(2011)
46_9214659 		0.798
PTBP1
M228_0.6 		Homo sapiens HYUUUYU RNAcompete
Ray et al.(2013)
RNCMPT00269 		0.798
PTBP1
M227_0.6 		Homo sapiens HYUUUYU RNAcompete
Ray et al.(2013)
RNCMPT00268 		0.798
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSSSCP00000005863 RRM 47 100
ENSSSCP00000005863 RRM 170 236
ENSSSCP00000005863 RRM 348 414
ENSSSCP00000005863 RRM 465 529

Links

Other RRM family RBPs
Other Sus scrofa RBPs

87 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ROD1 Equus caballus ENSECAG00000021243 I 1.000
ROD1 Bos taurus ENSBTAG00000016750 I 0.980
ROD1 Oryctolagus cuniculus ENSOCUG00000017670 I 0.976
ENSPPYG00000019504 Pongo pygmaeus ENSPPYG00000019504 I 0.976
ROD1 Cavia porcellus ENSCPOG00000011586 I 0.976
ROD1 Pan troglodytes ENSPTRG00000021263 I 0.972
ROD1 Gorilla gorilla ENSGGOG00000001755 I 0.972
ROD1 Homo sapiens ENSG00000119314 I 0.972
ROD1 Macaca mulatta ENSMMUG00000000464 I 0.972
ROD1 Loxodonta africana ENSLAFG00000011358 I 0.969
Rod1 Rattus norvegicus ENSRNOG00000016334 I 0.961
Rod1 Mus musculus ENSMUSG00000028382 I 0.961
ROD1 Callithrix jacchus ENSCJAG00000017686 I 0.957
ROD1 Monodelphis domestica ENSMODG00000005502 I 0.945
ROD1 Canis familiaris ENSCAFG00000003015 I 0.933
ROD1 Anolis carolinensis ENSACAG00000017316 I 0.921
ROD1 Tursiops truncatus ENSTTRG00000009283 N 0.870
rod1 Xenopus tropicalis ENSXETG00000002225 I 0.870
ROD1 Choloepus hoffmanni ENSCHOG00000002039 N 0.850
ROD1 Sorex araneus ENSSARG00000002649 N 0.850
ROD1 Danio rerio ENSDARG00000043757 I 0.839
ROD1 Procavia capensis ENSPCAG00000002288 N 0.835
ROD1 Tarsius syrichta ENSTSYG00000010375 N 0.835
Ptbp1 Rattus norvegicus ENSRNOG00000010448 I 0.816
Ptbp1 Mus musculus ENSMUSG00000006498 I 0.816
Q5F456_CHICK Gallus gallus ENSGALG00000001962 I 0.812
PTBP1 Meleagris gallopavo ENSMGAG00000003503 I 0.812
AAF00041 Xenopus laevis AAF00041 I 0.809
PTBP1 Pteropus vampyrus ENSPVAG00000008288 I 0.809
PTBP1 Canis familiaris ENSCAFG00000019693 I 0.809
ENSPPYG00000009289 Pongo pygmaeus ENSPPYG00000009289 I 0.805
PTBP1 Homo sapiens ENSG00000011304 D 0.805
PTBP1 Sus scrofa ENSSSCG00000013421 I 0.805
PTBP1 Taeniopygia guttata ENSTGUG00000000641 I 0.805
XR_025154.1 Pan troglodytes ENSPTRG00000010165 I 0.805
PTBP1 Monodelphis domestica ENSMODG00000006302 I 0.804
PTBP1 Macropus eugenii ENSMEUG00000006710 I 0.804
AAH45068 Xenopus laevis AAH45068 I 0.802
PTBP1 Ornithorhynchus anatinus ENSOANG00000009191 I 0.801
PTBP1 Tursiops truncatus ENSTTRG00000003439 I 0.797
PTBP1 Callithrix jacchus ENSCJAG00000020162 I 0.797
PTBP1 Cavia porcellus ENSCPOG00000025512 I 0.796
ROD1 Vicugna pacos ENSVPAG00000006136 N 0.795
PTBP1 Equus caballus ENSECAG00000018845 I 0.789
PTBP1 Gasterosteus aculeatus ENSGACG00000011048 I 0.786
ptbp1a Danio rerio ENSDARG00000019362 I 0.786
ptbp1b Danio rerio ENSDARG00000031907 I 0.781
PTBP1 Takifugu rubripes ENSTRUG00000011360 I 0.774
PTBP1 Oryzias latipes ENSORLG00000011430 I 0.773
PTBP1 Loxodonta africana ENSLAFG00000027110 I 0.765
ENSMLUG00000003320 Myotis lucifugus ENSMLUG00000003320 I 0.761
ROD1 Taeniopygia guttata ENSTGUG00000001262 N 0.760
PTBP1 Macaca mulatta ENSMMUG00000016450 I 0.758
ptbp1 Xenopus tropicalis ENSXETG00000021661 I 0.758
ROD1 Pteropus vampyrus ENSPVAG00000002177 N 0.756
PTBP1 Oryzias latipes ENSORLG00000014019 I 0.754
AAH97557 Xenopus laevis AAH97557 I 0.754
PTBP2 Loxodonta africana ENSLAFG00000017343 I 0.747
ENSETEG00000006890 Echinops telfairi ENSETEG00000006890 I 0.745
PTBP2 Pan troglodytes ENSPTRG00000000987 I 0.743
PTBP2 Oryctolagus cuniculus ENSOCUG00000017608 I 0.743
Ptbp2 Rattus norvegicus ENSRNOG00000010827 I 0.743
Ptbp2 Mus musculus ENSMUSG00000028134 I 0.743
ENSPPYG00000001132 Pongo pygmaeus ENSPPYG00000001132 I 0.743
PTBP2 Ornithorhynchus anatinus ENSOANG00000004656 I 0.743
PTBP2 Homo sapiens ENSG00000117569 I 0.743
Ame_R002925 Ailuropoda melanoleuca Ame_R002925 I 0.743
PTBP2 Anolis carolinensis ENSACAG00000005600 I 0.743
PTBP2 Vicugna pacos ENSVPAG00000002841 I 0.743
PTBP2 Tursiops truncatus ENSTTRG00000012904 I 0.743
PTBP2 Tarsius syrichta ENSTSYG00000002576 I 0.743
PTBP2 Cavia porcellus ENSCPOG00000003762 I 0.743
PTBP2 Canis familiaris ENSCAFG00000020080 I 0.743
PTBP2 Gorilla gorilla ENSGGOG00000000659 I 0.743
PTBP2 Macaca mulatta ENSMMUG00000016130 I 0.743
PTBP2 Myotis lucifugus ENSMLUG00000002522 I 0.742
LOC100057336 Equus caballus ENSECAG00000015783 I 0.740
PTBP2 Meleagris gallopavo ENSMGAG00000007308 I 0.739
Q9YI60_CHICK Gallus gallus ENSGALG00000005552 I 0.739
PTBP2 Monodelphis domestica ENSMODG00000004211 I 0.739
Ptbp1 Dipodomys ordii ENSDORG00000002835 I 0.738
PTBP1 Takifugu rubripes ENSTRUG00000010168 I 0.734
PTBP2 Taeniopygia guttata ENSTGUG00000005558 I 0.732
PTBP1 Procavia capensis ENSPCAG00000007614 I 0.729
ROD1 Takifugu rubripes ENSTRUG00000007042 I 0.718
PTBP2 Tetraodon nigroviridis ENSTNIG00000018950 I 0.714
ROD1 Tetraodon nigroviridis ENSTNIG00000002790 I 0.711