SLTM (Tetraodon nigroviridis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSTNIG00000009334 T42068_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTNIP00000012202 RRM 346 416

Links

Other RRM family RBPs
Other Tetraodon nigroviridis RBPs

43 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAI00172 Xenopus laevis AAI00172 N 0.859
Ame_R015170 Ailuropoda melanoleuca Ame_R015170 N 0.817
Ame_R016388 Ailuropoda melanoleuca Ame_R016388 N 0.704
SLTM Anolis carolinensis ENSACAG00000015120 N 0.803
SLTM Bos taurus ENSBTAG00000011319 N 0.817
SLTM Canis familiaris ENSCAFG00000016586 N 0.817
SLTM Choloepus hoffmanni ENSCHOG00000001125 N 0.789
SLTM Callithrix jacchus ENSCJAG00000020395 N 0.803
SLTM Cavia porcellus ENSCPOG00000026109 N 0.817
ENSDARG00000017150 Danio rerio ENSDARG00000017150 N 0.859
SLTM Dasypus novemcinctus ENSDNOG00000002975 N 0.817
Sltm Dipodomys ordii ENSDORG00000007463 N 0.817
LOC100068259 Equus caballus ENSECAG00000011267 N 0.817
SLTM Erinaceus europaeus ENSEEUG00000000580 N 0.746
SLTM Echinops telfairi ENSETEG00000008003 N 0.817
SLTM Felis catus ENSFCAG00000004826 N 0.803
SLTM Homo sapiens ENSG00000137776 N 0.817
SLTM Gasterosteus aculeatus ENSGACG00000015814 N 0.887
SLTM Gallus gallus ENSGALG00000004192 N 0.803
SLTM Loxodonta africana ENSLAFG00000017922 N 0.803
SLTM Meleagris gallopavo ENSMGAG00000005313 N 0.803
SLTM Microcebus murinus ENSMICG00000013069 N 0.803
SLTM Macaca mulatta ENSMMUG00000022200 N 0.817
XM_001377567.1 Monodelphis domestica ENSMODG00000008794 N 0.817
Sltm Mus musculus ENSMUSG00000032212 N 0.803
Safb2 Mus musculus ENSMUSG00000042625 N 0.704
SLTM Ornithorhynchus anatinus ENSOANG00000012311 N 0.817
SLTM Oryctolagus cuniculus ENSOCUG00000003327 N 0.817
SLTM Otolemur garnettii ENSOGAG00000011297 N 0.817
SLTM Oryzias latipes ENSORLG00000008161 N 0.873
ENSPPYG00000006515 Pongo pygmaeus ENSPPYG00000006515 N 0.817
SLTM Pan troglodytes ENSPTRG00000007121 N 0.817
SLTM Pteropus vampyrus ENSPVAG00000015056 N 0.817
Sltm Rattus norvegicus ENSRNOG00000013708 N 0.817
ENSSSCG00000004591 Sus scrofa ENSSSCG00000004591 N 0.803
ENSSSCG00000004592 Sus scrofa ENSSSCG00000004592 N 0.803
SLTM Tupaia belangeri ENSTBEG00000000945 N 0.817
SLTM Taeniopygia guttata ENSTGUG00000006017 N 0.803
SLTM Takifugu rubripes ENSTRUG00000017767 N 0.972
SLTM Tursiops truncatus ENSTTRG00000005246 N 0.817
SLTM Vicugna pacos ENSVPAG00000008606 N 0.817
sltm Xenopus tropicalis ENSXETG00000010840 N 0.859
Q498L2 Xenopus laevis Q498L2 N 0.859