celf1 (Xenopus tropicalis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSXETG00000009044 T42856_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
ENSXETP00000019815 RRM 45 115
ENSXETP00000019815 RRM 150 218
ENSXETP00000019815 RRM 447 517
ENSXETP00000019816 RRM 18 88
ENSXETP00000019816 RRM 110 178
ENSXETP00000019816 RRM 407 477

Links

Other RRM family RBPs
Other Xenopus tropicalis RBPs

91 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAB09041 Xenopus laevis AAB09041 N 0.901
AAC41243 Xenopus laevis AAC41243 N 0.972
AAH45035 Xenopus laevis AAH45035 N 0.901
AAH57743 Xenopus laevis AAH57743 N 0.972
AAH70706 Xenopus laevis AAH70706 N 0.972
AAI08575 Xenopus laevis AAI08575 N 0.972
ACH69783 Xenopus laevis ACH69783 N 0.874
Ame_R009875 Ailuropoda melanoleuca Ame_R009875 N 0.943
Ame_R017712 Ailuropoda melanoleuca Ame_R017712 N 0.906
CELF1 Anolis carolinensis ENSACAG00000002114 N 0.948
CELF2 Anolis carolinensis ENSACAG00000007661 N 0.906
A7MB95_BOVIN Bos taurus ENSBTAG00000002520 N 0.943
Q2KI16_BOVIN Bos taurus ENSBTAG00000008937 I 0.887
CELF2 Canis familiaris ENSCAFG00000004973 N 0.906
CELF1 Canis familiaris ENSCAFG00000008452 N 0.943
CELF2 Choloepus hoffmanni ENSCHOG00000002945 N 0.859
CELF1 Choloepus hoffmanni ENSCHOG00000004196 N 0.797
LOC100392717 Callithrix jacchus ENSCJAG00000020133 N 0.943
LOC100391960 Callithrix jacchus ENSCJAG00000020663 I 0.906
CELF1 Cavia porcellus ENSCPOG00000007871 N 0.943
CELF2 Cavia porcellus ENSCPOG00000012567 N 0.906
celf2 Danio rerio ENSDARG00000002131 N 0.887
celf1 Danio rerio ENSDARG00000005315 N 0.896
CELF1 Dasypus novemcinctus ENSDNOG00000009523 N 0.796
Celf2 Dipodomys ordii ENSDORG00000006455 N 0.736
Celf1 Dipodomys ordii ENSDORG00000013721 N 0.929
CELF2 Equus caballus ENSECAG00000006649 N 0.906
CELF1 Equus caballus ENSECAG00000007741 N 0.943
CELF2 Erinaceus europaeus ENSEEUG00000005658 N 0.906
CELF1 Erinaceus europaeus ENSEEUG00000009782 N 0.810
CELF2 Homo sapiens ENSG00000048740 N 0.906
CELF1 Homo sapiens ENSG00000149187 N 0.943
CELF2 Gasterosteus aculeatus ENSGACG00000004426 N 0.836
CELF1 Gasterosteus aculeatus ENSGACG00000014226 N 0.811
CELF2_CHICK Gallus gallus ENSGALG00000006713 N 0.906
CELF1_CHICK Gallus gallus ENSGALG00000008097 N 0.943
CELF1 Gorilla gorilla ENSGGOG00000004106 N 0.783
CELF2 Gorilla gorilla ENSGGOG00000009330 I 0.906
CELF1 Loxodonta africana ENSLAFG00000003484 N 0.943
CELF2 Loxodonta africana ENSLAFG00000013612 N 0.906
CELF1 Macropus eugenii ENSMEUG00000007763 N 0.948
CELF2 Macropus eugenii ENSMEUG00000015276 N 0.769
CELF1 Meleagris gallopavo ENSMGAG00000010629 N 0.943
CELF1 Microcebus murinus ENSMICG00000007157 N 0.896
CELF2 Microcebus murinus ENSMICG00000007867 N 0.906
CELF1 Myotis lucifugus ENSMLUG00000016631 N 0.788
CELF2 Macaca mulatta ENSMMUG00000011468 N 0.906
CELF1 Macaca mulatta ENSMMUG00000011657 N 0.943
CELF2 Monodelphis domestica ENSMODG00000016763 N 0.726
CELF1 Monodelphis domestica ENSMODG00000019913 N 0.948
Celf2 Mus musculus ENSMUSG00000002107 N 0.906
Celf1 Mus musculus ENSMUSG00000005506 N 0.938
CELF1 Ornithorhynchus anatinus ENSOANG00000007896 N 0.957
CELF1 Oryctolagus cuniculus ENSOCUG00000001311 N 0.943
CELF2 Oryctolagus cuniculus ENSOCUG00000004961 N 0.906
CELF1 Ochotona princeps ENSOPRG00000003239 N 0.929
CELF2 Ochotona princeps ENSOPRG00000011502 N 0.906
CELF2 Oryzias latipes ENSORLG00000003894 N 0.836
CELF2 Oryzias latipes ENSORLG00000017111 N 0.732
CELF1 Procavia capensis ENSPCAG00000002631 N 0.915
CELF2 Procavia capensis ENSPCAG00000010882 N 0.774
ENSPPYG00000002083 Pongo pygmaeus ENSPPYG00000002083 N 0.906
ENSPPYG00000003302 Pongo pygmaeus ENSPPYG00000003302 N 0.934
CELF2 Pan troglodytes ENSPTRG00000002284 N 0.906
CELF1 Pan troglodytes ENSPTRG00000003568 N 0.810
CELF1 Pteropus vampyrus ENSPVAG00000007340 N 0.749
Cugbp1 Rattus norvegicus ENSRNOG00000010379 N 0.938
Cugbp2 Rattus norvegicus ENSRNOG00000023661 N 0.906
CELF1 Sorex araneus ENSSARG00000003207 N 0.810
CELF1 Tupaia belangeri ENSTBEG00000005140 N 0.801
CELF2 Tupaia belangeri ENSTBEG00000007939 N 0.906
CUGBP2-1 Taeniopygia guttata ENSTGUG00000002136 N 0.906
CUGBP1 Taeniopygia guttata ENSTGUG00000010377 N 0.943
CELF2 Tetraodon nigroviridis ENSTNIG00000007201 N 0.892
CELF2 Tetraodon nigroviridis ENSTNIG00000016009 N 0.845
CELF1 Takifugu rubripes ENSTRUG00000000617 N 0.708
CELF1 Takifugu rubripes ENSTRUG00000001711 N 0.896
CELF2 Takifugu rubripes ENSTRUG00000010147 N 0.892
CELF2 Takifugu rubripes ENSTRUG00000016905 N 0.840
CELF1 Tarsius syrichta ENSTSYG00000003866 N 0.749
CELF2 Tarsius syrichta ENSTSYG00000005118 N 0.722
CELF1 Tursiops truncatus ENSTTRG00000014157 N 0.943
CELF2 Tursiops truncatus ENSTTRG00000014665 N 0.755
CELF1 Vicugna pacos ENSVPAG00000000336 N 0.943
CELF2 Vicugna pacos ENSVPAG00000009360 N 0.722
celf2 Xenopus tropicalis ENSXETG00000021992 N 0.901
e_gw.91.28.1 Branchiostoma floridae e_gw.91.28.1 I 0.755
O57406 Xenopus laevis O57406 N 0.972
Q6PF35 Xenopus laevis Q6PF35 N 0.972
Q7ZXE2 Xenopus laevis Q7ZXE2 N 0.901