CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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celf1
(
Xenopus tropicalis
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSXETG00000009044
T42856_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSXETP00000019815
RRM
45
115
MFVGQVPRSWSEKELRELFEQYGAVYEINVLRDRSQNPPQSKGCCFITFYTRKAALEAQNALHNMKVLPGM
ENSXETP00000019815
RRM
150
218
LFVGMVSKKCNENDIRAMFSQFGQIEESRILRGPDGMSRGCAFVTFTTRSMAQMAIKAMHQAQTMEGCS
ENSXETP00000019815
RRM
447
517
LFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLK
ENSXETP00000019816
RRM
18
88
MFVGQVPRSWSEKELRELFEQYGAVYEINVLRDRSQNPPQSKGCCFITFYTRKAALEAQNALHNMKVLPGM
ENSXETP00000019816
RRM
110
178
LFVGMVSKKCNENDIRAMFSQFGQIEESRILRGPDGMSRGCAFVTFTTRSMAQMAIKAMHQAQTMEGCS
ENSXETP00000019816
RRM
407
477
LFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLK
Links
Other
RRM
family RBPs
Other
Xenopus tropicalis
RBPs
91 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
BC1G_07112
Botrytis cinerea
BC1G_07112
N
0.000
estExt_fgenesh1_pg.C_20306
Cryphonectria parasitica
estExt_fgenesh1_pg.C_20306
N
0.000
estExt_fgenesh2_kg.C_60272
Thielavia terrestris
estExt_fgenesh2_kg.C_60272
N
0.000
estExt_Genewise1.C_100053
Neurospora discreta
estExt_Genewise1.C_100053
N
0.000
estExt_Genewise1.C_70072
Myceliophthora thermophila
estExt_Genewise1.C_70072
N
0.000
estExt_Genewise1Plus.C_230153
Neurospora tetrasperma
estExt_Genewise1Plus.C_230153
N
0.000
e_gw1.12.113.1
Trichoderma virens
e_gw1.12.113.1
N
0.000
e_gw1.5.255.1
Trichoderma atroviride
e_gw1.5.255.1
N
0.000
fgenesh5_pg.C_scaffold_20000146
Trichoderma reesei
fgenesh5_pg.C_scaffold_20000146
N
0.000
FGSG_04349
Fusarium graminearum
FGSG_04349
N
0.000
FOXG_13887
Fusarium oxysporum
FOXG_13887
N
0.000
GLRG_08153
Colletotrichum graminicola
GLRG_08153
N
0.000
gw1.11.93.1
Nectria haematococca
gw1.11.93.1
N
0.000
MGG_12809
Magnaporthe oryzae
MGG_12809
N
0.000
NCU09352
Neurospora crassa
NCU09352
N
0.000
Pa_3_11410
Podospora anserina
Pa_3_11410
N
0.000
SS1G_05361
Sclerotinia sclerotiorum
SS1G_05361
N
0.000
VDAG_01251
Verticillium dahliae
VDAG_01251
N
0.000